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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
39
B cell
34
endothelial cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
25
macrophage
23
epithelial cell of proximal tubule
23
fibroblast
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
hepatocyte
22
pericyte cell
21
glomerular endothelial cell
21
natural killer cell
20
T cell
20
endothelial cell of umbilical vein
20
mononuclear cell
19
foreskin keratinocyte
18
T-helper 1 cell
18
trophoblast cell
17
T-helper 17 cell
17
osteoblast
17
pancreatic ductal cell
16
T-helper 2 cell
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
16
keratinocyte
16
pancreatic alpha cell
16
pancreatic beta cell
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
smooth muscle cell
14
pancreatic acinar cell
14
pancreatic delta cell
13
mammary epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary gland epithelial cell
11
erythroblast
11
glomerular visceral epithelial cell
11
skeletal muscle satellite cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
hepatic stellate cell
9
mature neutrophil
9
naive T cell
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
memory B cell
8
myoepithelial cell of mammary gland
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
pulmonary artery endothelial cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
colon epithelial cell
6
dermis lymphatic vessel endothelial cell
6
foreskin melanocyte
6
gamma-delta T cell
6
peripheral blood mononuclear cell
6
plasma cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type II pneumocyte
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain microvascular endothelial cell
5
cortical cell of adrenal gland
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mast cell
5
naive B cell
5
non-pigmented ciliary epithelial cell
5
tracheal epithelial cell
4
CD4-positive helper T cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
central memory CD8-positive, alpha-beta T cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
effector memory CD8-positive, alpha-beta T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
kidney connecting tubule epithelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
renal epithelial cell
4
smooth muscle cell of the esophagus
Date released
2
November, 2021
Software used
2
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
month_released!
February, 2024
organ_slims!
skeleton
uterus
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR269MUO
released
Annotation file set
: Accessible chromatin annotation of Fetal Ventricular Cardiomyocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR550PNN
released
Annotation file set
: Accessible chromatin annotation of Fetal Atrial Cardiomyocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE