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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
primary cell
Biosample term
57
A549
35
hematopoietic multipotent progenitor cell
25
adrenal gland
25
liver
24
adipose tissue
23
retina
22
body of pancreas
22
stomach
21
tibial nerve
20
pigmented layer of retina
20
spleen
19
K562
19
MCF-7
18
caudate nucleus
18
omental fat pad
17
islet of Langerhans
17
subcutaneous adipose tissue
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
ascending aorta
15
heart left ventricle
14
coronary artery
14
pancreas
14
right atrium auricular region
14
substantia nigra
14
tibial artery
13
Peyer's patch
13
cerebellum
13
ovary
13
upper lobe of left lung
12
endocrine pancreas
12
frontal cortex
12
layer of hippocampus
12
psoas muscle
11
HeLa-S3
11
aorta
11
putamen
11
temporal lobe
10
Ammon's horn
10
angular gyrus
10
esophagus squamous epithelium
10
lower leg skin
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
right lobe of liver
9
skeletal muscle tissue
9
testis
9
thoracic aorta
9
vagina
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
prostate gland
8
small intestine
8
stomach smooth muscle
7
LNCaP clone FGC
7
T47D
7
gastroesophageal sphincter
6
Brodmann (1909) area 46
6
globus pallidus
6
lung
6
middle frontal gyrus
6
muscle cell
6
right cardiac atrium
6
uterus
5
C1 segment of cervical spinal cord
5
GM12878
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
cerebellar cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart
5
heart right ventricle
5
hypothalamus
5
left ventricle myocardium
5
medulla oblongata
5
midbrain
5
nucleus accumbens
5
pons
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
bipolar neuron
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
mucosa of stomach
4
occipital lobe
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A
3
NCI-H226 cell
3
VCaP cell
3
iPS-NIHi11
3
iPS-NIHi7
3
inferior parietal cortex
3
mesenchymal stem cell
3
olfactory neurosphere cell line
3
rectum smooth muscle tissue
3
renal cell carcinoma
3
suprapubic skin
3
visceral abdominal adipose tissue
2
AG10803
2
LNCAP
2
blood
2
cardiomyocytes (cardiac muscle cell)
2
lymphocyte of B lineage (iPSC)
2
middle frontal area 46
1
A-673 cell
1
AG09309
1
AG09319
1
Caco-2
1
HepG2
1
Ishikawa
1
Karpas-422
1
LoVo
1
NCI-H226
1
RCC
1
VCaP
1
aorta wall
1
bladder
1
breast - mammary tissue
1
cells - EBV-transformed lymphocytes
1
cerebrospinal fluid
1
cervix - ectocervix
Organ
5
heart
Life stage
71
embryonic
5
adult
4
child
4
fetal
1
young adult
Date released
3
September, 2022
1
February, 2021
1
January, 2020
Software used
3
r
1
chromhmm
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
myoepithelial cell of mammary gland
biosample_type!
primary cell
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP