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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
130
monocyte
50
CD8-positive, alpha-beta T cell
29
fibroblast
28
macrophage
20
smooth muscle cell
19
CD14-positive monocyte
19
pericyte cell
19
regulatory T cell
16
B cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
14
T-helper 1 cell
14
astrocyte
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
osteoblast
13
foreskin fibroblast
12
T-helper 17 cell
12
excitatory neuron
12
natural killer cell
11
erythroblast
10
T cell
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neutrophil
9
skeletal muscle fiber
8
T-helper 2 cell
8
glutamatergic neuron
8
pancreatic stellate cell
7
cardiac muscle cell
7
fibroblast of lung
7
kidney interstitial cell
7
mesangial cell
7
mesenchymal stem cell
7
type I muscle cell
7
type II muscle cell
6
T-cell
6
alternatively activated macrophage
6
gamma-delta T cell
6
hepatic stellate cell
6
mast cell
6
naive B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
plasma cell
6
trophoblast cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
myofibroblast cell
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
neurosphere
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
enteric neuron
3
erythroid cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
foreskin melanocyte
3
glial cell
3
kidney cell
3
kidney resident macrophage
3
mammary epithelial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
skeletal muscle cell
3
skin fibroblast
3
smooth muscle cell of the brain vasculature
3
smooth muscle cell of the coronary artery
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
alveolar macrophage
2
articular chondrocyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
effector memory CD4-positive, alpha-beta T cell
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of peridontal ligament
2
fibroblast of the aortic adventitia
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
melanocyte
2
mononuclear cell
2
myeloid dendritic cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
neuron
2
neuronal stem cell
2
non-classical monocyte
2
pancreatic endocrine cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
regular atrial cardiac myocyte
2
renal proximal tubule cell
2
skeletal muscle fibroblast
2
small cell ovarian carcinoma cell
2
somatic muscle myotube
2
stellate neuron
Organ
3
connective tissue
3
skin of body
Life stage
1
adult
Date released
September, 2022
2
February, 2021
1
May, 2021
1
October, 2022
Software used
1
abc
1
chromhmm
1
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
month_released!
September, 2022
organ_slims!
epithelium
Showing 4 of 4 results
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Download
FileSet
DSR441OMK
released
Annotation file set
: Binding sites annotation for fibroblast of dermis (NHDF-Ad) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR409RJA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of dermis
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR459XOM
released
Annotation file set
: Histone modifications annotation for Others Head_and_Neck_Neoplasms from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627NNY
released
Annotation file set
: enhancer-gene predicton of fibroblast_of_dermis-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP