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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
7
tsv
7
txt
4
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
40
common myeloid progenitor, CD34-positive
33
endothelial cell
32
B cell
30
fibroblast
23
CD4-positive, alpha-beta memory T cell
23
pericyte cell
22
macrophage
21
smooth muscle cell
19
hepatocyte
17
natural killer cell
16
T cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
CD8-positive, alpha-beta T cell
14
astrocyte
14
endothelial cell of umbilical vein
14
foreskin fibroblast
14
keratinocyte
14
mononuclear cell
13
osteoblast
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of lung
12
mammary epithelial cell
12
pancreatic beta cell
12
skeletal muscle myoblast
11
pancreatic alpha cell
11
pancreatic ductal cell
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
mammary gland epithelial cell
10
monocyte
10
neurosphere
10
pancreatic delta cell
9
fibroblast of cardiac tissue
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
dermis blood vessel endothelial cell
8
erythroblast
8
fibroblast of dermis
8
glutamatergic neuron
8
mast cell
8
pancreatic acinar cell
7
endothelial cell of lymphatic vessel
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
hepatic stellate cell
7
kidney tubule cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
skeletal muscle fiber
7
skin fibroblast
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of prostate
6
epithelial cell of proximal tubule
6
fibroblast of breast
6
luminal epithelial cell of mammary gland
6
memory B cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
adipocyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
endocardial cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
gabaergic neuron
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
mesenchymal stem cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
CD4-positive helper T cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
astrocyte of the spinal cord
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
enteric neuron
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
goblet cell
3
kidney capillary endothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
stromal cell of bone marrow
3
thyroid follicular cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
leukocyte
2
luteal cell
2
mammary stem cell
Organ
4
connective tissue
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
May, 2021
Showing 4 of 4 results
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Download
FileSet
DSR197PKJ
released
Annotation file set
: Candidate regulatory elements for BSS00344 fibroblast of peridontal ligament from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR299QOE
released
Annotation file set
: Target gene predictions for BSS00344 fibroblast of peridontal ligament from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534TSK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of peridontal ligament
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585DKC
released
Annotation file set
: Accessible chromatin annotation for Others HPdLF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP