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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
128
monocyte
53
common myeloid progenitor, CD34-positive
43
CD8-positive, alpha-beta T cell
35
B cell
32
CD4-positive, alpha-beta memory T cell
26
regulatory T cell
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
20
T-helper 17 cell
20
mononuclear cell
17
T-helper 2 cell
17
trophoblast cell
16
CD14-positive monocyte
16
natural killer cell
16
osteoblast
15
foreskin fibroblast
15
neutrophil
15
skeletal muscle myoblast
14
T cell
14
fibroblast of lung
13
CD4-positive, alpha-beta T cell
13
neurosphere
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
fibroblast of dermis
10
macrophage
9
fibroblast of cardiac tissue
9
mature neutrophil
9
naive T cell
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
7
CD1c-positive myeloid dendritic cell
7
astrocyte
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
skeletal muscle satellite cell
7
skin fibroblast
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney interstitial cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
T follicular helper cell
5
alternatively activated macrophage
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
memory B cell
5
mesangial cell
4
T-cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
inflammatory macrophage
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
erythroid cell
3
fibroblast
3
kidney cell
3
kidney resident macrophage
3
mammary epithelial cell
3
mammary stem cell
3
mast cell
3
mesenchymal stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
neoplastic cell
3
pericyte cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
effector memory CD4-positive, alpha-beta T cell
2
erythroid progenitor cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
myeloid dendritic cell
2
neuronal stem cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
somatic muscle myotube
2
vascular associated smooth muscle cell
1
B-1a B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Schwann cell
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
aortic smooth muscle cell
1
bone cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic stem cell
1
erythroid lineage cell
1
fat cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
head and neck neoplasia
1
helper T cell
1
immature natural killer cell
1
induced T-regulatory cell
1
mature B cell
1
mature eosinophil
1
megakaryocyte
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
myofibroblast cell
1
naive t cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic cell
1
pancreatic endocrine cell
1
pancreatic epsilon cell
1
pancreatic stellate cell
1
pericardium fibroblast
1
peripheral blood
1
plasmacytoid dendritic cell
1
progenitor cell
1
quiescent pancreatic stellate cell
1
seminoma cell
1
sensory neuron
1
smooth muscle cell
Life stage
1
embryonic
1
unknown
Date released
1
February, 2021
1
May, 2022
Software used
1
encode-ccres
1
macs
Lab
15
Bing Ren, UCSD
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
epithelium
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR680WZM
released
Annotation file set
: Accessible chromatin from snATAC-seq of smooth muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR109PHT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of skin of right quadriceps
Lab:
AMP-T2D consortium
Project:
AMP