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Schema
Citing CMDGA
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Annotation type
1
caQTL
1
candidate regulatory elements
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
109
monocyte
46
CD8-positive, alpha-beta T cell
30
endothelial cell
27
fibroblast
19
CD14-positive monocyte
19
macrophage
19
pericyte cell
19
smooth muscle cell
17
hepatocyte
15
common myeloid progenitor, CD34-positive
14
B cell
13
astrocyte
13
foreskin fibroblast
13
mammary epithelial cell
12
CD4-positive, alpha-beta T cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
osteoblast
12
pancreatic ductal cell
11
endothelial cell of umbilical vein
11
keratinocyte
11
pancreatic beta cell
10
pancreatic alpha cell
10
regulatory T cell
9
erythroblast
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
natural killer cell
9
pancreatic acinar cell
8
T cell
8
glutamatergic neuron
8
pancreatic delta cell
8
skeletal muscle myoblast
7
cardiac muscle cell
7
fibroblast of lung
7
foreskin keratinocyte
7
retinal pigment epithelial cell
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
type II pneumocyte
6
T-cell
6
T-helper 1 cell
6
bronchial epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
memory B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
trophoblast cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
basal cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inhibitory neuron
5
mast cell
5
mesenchymal stem cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
neutrophil
5
plasma cell
5
tracheal epithelial cell
4
CD1c-positive myeloid dendritic cell
4
T-helper 17 cell
4
T-helper 2 cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of proximal tubule
4
hepatic stellate cell
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
neurosphere
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
renal cortical epithelial cell
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
erythroid cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
foreskin melanocyte
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
goblet cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
skeletal muscle cell
3
skin fibroblast
3
smooth muscle cell of the brain vasculature
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of peridontal ligament
2
fibroblast of the aortic adventitia
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
iris pigment epithelial cell
2
leukemic stem cell
2
leukocyte
2
lung microvascular endothelial cell
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
mature natural killer cell
2
mature neutrophil
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
microglial cell
2
mononuclear cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
neuronal stem cell
2
non keratinizing barrier epithelial cell
Organ
2
blood vessel
2
connective tissue
2
vasculature
Life stage
1
unknown
Date released
September, 2022
1
February, 2021
1
February, 2023
Software used
1
encode-ccres
1
rasqual
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
neutrophil
month_released!
September, 2022
Showing 2 of 2 results
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Download
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761GFE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of the aortic adventitia
Lab:
AMP-T2D consortium
Project:
AMP