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Schema
Citing CMDGA
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Annotation type
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
130
monocyte
43
CD8-positive, alpha-beta T cell
42
endothelial cell
40
common myeloid progenitor, CD34-positive
37
B cell
34
hepatocyte
32
fibroblast
31
macrophage
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
26
regulatory T cell
24
pericyte cell
22
T cell
22
epithelial cell of proximal tubule
22
smooth muscle cell
21
CD8-positive, alpha-beta memory T cell
21
natural killer cell
20
T-helper 1 cell
20
glomerular endothelial cell
19
T-helper 17 cell
19
mononuclear cell
19
pancreatic ductal cell
18
pancreatic beta cell
17
pancreatic alpha cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
keratinocyte
16
osteoblast
16
pancreatic acinar cell
16
pancreatic delta cell
15
T-helper 2 cell
15
trophoblast cell
14
skeletal muscle myoblast
13
fibroblast of lung
13
mammary gland epithelial cell
13
neutrophil
12
excitatory neuron
12
fibroblast of cardiac tissue
12
foreskin keratinocyte
12
skeletal muscle satellite cell
11
erythroblast
11
fibroblast of dermis
11
foreskin fibroblast
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
hepatic stellate cell
10
mammary epithelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
9
kidney tubule cell
9
mast cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neurosphere
9
skeletal muscle fiber
9
skin fibroblast
8
glutamatergic neuron
8
pancreatic stellate cell
7
CD4-positive, alpha-beta T cell
7
endothelial cell of lymphatic vessel
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
renal cortical epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
adipocyte
6
alternatively activated macrophage
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
fibroblast of breast
6
gamma-delta T cell
6
kidney epithelial cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
plasma cell
6
pulmonary artery endothelial cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
epithelial cell of esophagus
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
Organ
4
blood vessel
4
connective tissue
4
vasculature
Life stage
3
unknown
Date released
3
September, 2022
1
February, 2023
Software used
2
r
1
chromhmm
encode-ccres
1
rasqual
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
eye
software_used.software.name!
encode-ccres
Showing 4 of 4 results
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Download
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR902WKL
released
Annotation file set
: Candidate regulatory elements for BSS00347 fibroblast of the aortic adventitia from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987AUB
released
Annotation file set
: Target gene predictions for BSS00347 fibroblast of the aortic adventitia from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159VQB
released
Annotation file set
: Chromatin states for BSS00347 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP