Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
3
tissue
1
in vitro differentiated cells
Biosample term
72
heart
66
kidney
65
stomach
60
brain
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
48
placenta
45
neural progenitor cell
44
islet of Langerhans
44
muscle of leg
43
liver
42
large intestine
39
left lung
39
muscle of back
39
thymus
37
retina
34
hematopoietic multipotent progenitor cell
34
right lung
32
right kidney
31
adipose tissue
30
renal pelvis
29
renal cortex interstitium
28
heart left ventricle
27
left kidney
25
spleen
24
spinal cord
22
tibial nerve
21
adipocyte
20
body of pancreas
20
caudate nucleus
20
coronary artery
20
pigmented layer of retina
19
pancreas
19
subcutaneous adipose tissue
18
right atrium auricular region
18
sigmoid colon
18
tibial artery
17
ovary
17
psoas muscle
16
frontal cortex
16
heart right ventricle
15
cerebellum
15
omental fat pad
15
substantia nigra
15
thyroid gland
15
transverse colon
14
ascending aorta
14
embryonic stem cell
14
gastrocnemius medialis
14
putamen
14
testis
13
layer of hippocampus
13
muscle of trunk
13
skeletal muscle tissue
12
chorionic villus
12
endocrine pancreas
12
prostate gland
12
upper lobe of left lung
11
Ammon's horn
11
aorta
11
cardiomyocytes
11
left cardiac atrium
11
temporal lobe
10
Peyer's patch
10
chorion membrane
10
mesenchymal stem cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
thoracic aorta
9
trophoblast
8
T-cell acute lymphoblastic leukemia
8
angular gyrus
8
breast epithelium
8
cardiomyocytes (cardiac muscle cell)
8
colonic mucosa
8
esophagus
8
esophagus muscularis mucosa
8
left renal cortex interstitium
8
left renal pelvis
8
midbrain
8
neuroblastoma cell line
8
occipital lobe
8
right lobe of liver
8
right renal cortex interstitium
8
right renal pelvis
8
vagina
7
amygdala
7
cingulate gyrus
7
duodenal mucosa
7
esophagus squamous epithelium
7
eye
7
globus pallidus
7
hypothalamus
7
limb
7
mesendoderm
7
mucosa of rectum
7
nucleus accumbens
7
right cardiac atrium
7
stomach smooth muscle
7
superior temporal gyrus
7
tongue
7
urinary bladder
7
uterus
6
Brodmann (1909) area 46
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
endodermal cell
6
lower leg skin
6
medulla oblongata
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
neuronal stem cell
6
parathyroid adenoma
6
pons
6
retinal pigment epithelial cell
6
skin of body
5
C1 segment of cervical spinal cord
5
SGBS preadipocytes
5
bipolar neuron
5
cartilage tissue
5
chondrocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
middle frontal gyrus
5
pancreatic ductal cell
5
umbilical cord
4
B cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
adipose-derived stem cell
4
bone tissue
4
cardiac muscle cell
4
cerebellar cortex
4
colon adenocarcinoma
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
embryonic facial prominence
4
germinal matrix
4
inferior parietal cortex
4
mesodermal cell
4
olfactory neurosphere cell line
4
rectum smooth muscle tissue
4
rhabdomyosarcoma cell
4
smooth muscle cell
4
trophoblast cell
4
visceral abdominal adipose tissue
3
amnion
3
arm bone
3
cardiac mesoderm primordium
3
dorsolateral prefrontal cortex
3
ectodermal cell
3
esophageal adenocarcinoma
3
femur
3
foreskin keratinocyte
3
foreskin melanocyte
3
gastroesophageal sphincter
3
germinal center
3
hepatocyte
3
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
3
islet precursor cell
3
leg bone
3
mammary gland epithelial cell
3
mucosa of stomach
3
neural cell
3
neuron
3
pancreatic ductal adenocarcinoma
3
prefrontal cortex
2
hindlimb muscle
2
muscle of leg
2
BICR 31
2
CD4-positive helper T cell
2
CD8-Positive T-Lymphocytes
2
EAhy 926 cell
2
T-lymphoma cell line
2
Th1 cell
2
atypical teratoid rhabdoid tumor
2
blood
2
breast carcinoma
2
chronic myelomonocytic leukemia
2
colorectal adenocarcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
2
diffuse large B-cell lymphoma
2
endometrial stromal cell
2
endometrial stromal tumor
2
endometriosis
2
endometrium cancer
2
endothelial cell
2
epidermal stem cell
2
erythroid progenitor cell
2
excitatory neuron
2
fallopian tube
2
fibroblast
Organ
3
musculature of body
3
stomach
1
kidney
Life stage
3
adult
Date released
3
September, 2022
1
June, 2020
Software used
encode-ccres
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
encode-ccres
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR779VQV
released
Annotation file set
: Candidate regulatory elements for BSS00381 gastroesophageal sphincter from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR813EZW
released
Annotation file set
: Target gene predictions for BSS00381 gastroesophageal sphincter from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR608ANH
released
Annotation file set
: Chromatin states for BSS00381 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002SLX
released
Annotation file set
: Accessible chromatin annotation for Kidney Carcinoma, Renal Cell from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP