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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
1
gene expression
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
snATAC-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
2
cell line
Biosample term
31
CD8-positive, alpha-beta T cell
30
endothelial cell
28
monocyte
27
fibroblast
25
macrophage
23
CD4-positive, alpha-beta memory T cell
22
pericyte cell
20
endothelial cell of umbilical vein
19
CD14-positive monocyte
19
foreskin keratinocyte
19
smooth muscle cell
18
trophoblast cell
17
B cell
17
T-helper 17 cell
17
astrocyte
17
keratinocyte
17
pancreatic ductal cell
16
foreskin fibroblast
16
regulatory T cell
15
hepatocyte
15
osteoblast
14
common myeloid progenitor, CD34-positive
14
pancreatic acinar cell
13
neurosphere
13
pancreatic beta cell
12
T cell
12
bronchial epithelial cell
12
excitatory neuron
12
pancreatic alpha cell
12
pancreatic delta cell
11
T-helper 1 cell
11
erythroblast
11
fibroblast of lung
11
mammary epithelial cell
11
skeletal muscle myoblast
10
T-helper 2 cell
10
neutrophil
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of dermis
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glomerular endothelial cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
epithelial cell of proximal tubule
7
kidney epithelial cell
7
mammary gland epithelial cell
7
natural killer cell
7
pancreatic stellate cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle satellite cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
naive B cell
6
olfactory receptor cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
CD4-positive helper T cell
5
T follicular helper cell
5
basal cell
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
dermis blood vessel endothelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
mast cell
5
mesenchymal stem cell
5
mononuclear cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
tracheal epithelial cell
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gabaergic neuron
4
gamma-delta T cell
4
glutamatergic neuron
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mature natural killer cell
4
mature neutrophil
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesangial cell
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
cardiac fibroblast
3
CD14-positive, CD16-negative classical monocyte
3
Ishikawa
3
S-shaped body
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
alternatively activated macrophage
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
cardiac fibroblast
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
glial cell
3
goblet cell
3
hepatic stellate cell
3
kidney interstitial cell
3
meso-epithelial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive T cell
3
naive regulatory T cell
3
naive t cell
3
neoplastic cell
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
Organ
2
vasculature
Life stage
adult
Date released
4
February, 2024
1
November, 2021
Software used
2
deltasvm
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
3
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
4
AMP
1
ENCODE
RFA
2
AMP
2
AMP2
1
ENCODE3
biosample_term_name!
tracheal epithelial cell
relevant_life_stage!
adult
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR787MRF
released
Annotation file set
: Accessible chromatin annotation of Fetal Enteric Glia from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR154JTR
released
Annotation file set
: Cell type chromatin broad peaks and bw of glial Schwann from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR429BRE
released
Annotation file set
: Cell type gene expression mean TPM and bw of glial Schwann from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR963XVP
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR265TNH
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP