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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
5
DNase-seq
3
ChIP-seq
Available data
13
tsv
13
txt
5
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
52
brain
35
K562
31
endothelial cell
22
hepatocyte
20
pigmented layer of retina
19
keratinocyte
18
foreskin keratinocyte
15
GM12878
15
endothelial cell of umbilical vein
15
pancreatic ductal cell
15
retinal pigment epithelial cell
13
mammary gland epithelial cell
12
caudate nucleus
12
endothelial cell of hepatic sinusoid
12
layer of hippocampus
12
pancreatic beta cell
11
pancreatic acinar cell
11
pancreatic alpha cell
10
EndoC_BH1
10
bronchial epithelial cell
10
epithelial cell of prostate
10
mammary epithelial cell
10
pancreatic delta cell
10
pituitary stalk
9
breast epithelium
9
choroid plexus epithelial cell
9
esophagus squamous epithelium
9
substantia nigra
9
temporal lobe
8
SK-N-DZ
8
SK-N-SH
8
colon epithelial cell
8
dermis blood vessel endothelial cell
7
GM06990
7
GM19240
7
HAP-1
7
HL-60
7
OCI-LY7
7
SK-N-MC
7
cerebellum
7
cingulate gyrus
7
frontal cortex
7
glomerular visceral epithelial cell
7
kidney tubule cell
7
type II pneumocyte
6
Ammon's horn
6
BE(2)-C
6
CMK
6
GM12875
6
GM19238
6
GM19239
6
NAMALWA cell
6
RPMI8226
6
angular gyrus
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of proximal tubule
6
globus pallidus
6
luminal epithelial cell of mammary gland
6
midbrain
6
myoepithelial cell of mammary gland
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
putamen
6
renal cortical epithelial cell
5
cardiac fibroblast
5
Daoy
5
GM12891
5
GM12892
5
KBM-7
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
epithelial cell of esophagus
5
glomerular endothelial cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
tracheal epithelial cell
4
A172
4
Brodmann (1909) area 46
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
M059J
4
NB4
4
U-87 MG
4
aortic endothelial cell
4
brain microvascular endothelial cell
4
brain pericyte
4
cerebellar cortex
4
dermis microvascular lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
medulla oblongata
4
mesothelial cell
4
middle frontal gyrus
4
non-pigmented ciliary epithelial cell
4
pancreatic A cell
4
pancreatic polypeptide-secreting cell
4
pons
4
type B pancreatic cell
4
type I pneumocyte
3
GM10847
3
GM12872
3
GM18526
3
GM18951
3
H54
3
club cell
3
endocardial cell
3
goblet cell
3
inferior parietal cortex
3
kidney capillary endothelial cell
3
medulloblastoma
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
prefrontal cortex
3
thyroid follicular cell
2
NAMALWA
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
foveolar cell of stomach
2
granular cell of epidermis
2
kidney epithelium
2
meso-epithelial cell
2
middle frontal area 46
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
paneth cell
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
vein endothelial cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12874
1
Glioblastoma
1
Karpas-422
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
bronchial goblet cell
1
cardiac fibroblast
1
cerebellum (Hemisphere)
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
claustrum of brain
1
corneal epithelium
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
entorhinal cortex
1
frontal pole
1
gastric goblet cell
1
glomerular epithelium
1
granulosa cell
1
hippocampal neuron
1
hypothalamus
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
locus ceruleus
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nephron tubule
1
neuroendocrine cell
1
nucleus accumbens
1
nucleus of ventral thalamus
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paraventricular nucleus of hypothalamus
1
parietal epithelial cell
Organ
5
epithelium
5
kidney
0
blood
0
brain
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR225CIF
released
Annotation file set
: Candidate regulatory elements for BSS00387 glomerular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373GGH
released
Annotation file set
: Target gene predictions for BSS00387 glomerular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267ZHH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE glomerular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR275CPF
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney glomerular endothelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549KDR
released
Annotation file set
: Accessible chromatin annotation of kidney glomerular endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP