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Schema
Clear Filters
Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
1150
whole blood
56
monocyte
48
heart
43
stomach
41
muscle of arm
39
A549
38
brain
38
endothelial cell
38
placenta
37
kidney
36
fibroblast
35
muscle of leg
34
adrenal gland
32
head of caudate nucleus
31
small intestine
30
common myeloid progenitor, CD34-positive
30
lung
29
B cell
29
T-cell
28
muscle of back
27
CD8-positive, alpha-beta T cell
26
macrophage
25
thymus
24
CD4-positive, alpha-beta T cell
23
HeLa-S3
23
renal pelvis
23
right lung
22
adipocyte
22
neural progenitor cell
21
K562
21
cardiac muscle cell
21
hepatocyte
21
islet of Langerhans
21
natural killer cell
21
retina
21
right kidney
20
H1-hESC
20
T cell
20
large intestine
20
pericyte
20
stimulated activated CD4-positive, alpha-beta T cell
19
dorsolateral prefrontal cortex
19
smooth muscle cell
19
spinal cord
18
T-helper 1 cell
18
glutamatergic neuron
18
heart left ventricle
18
hematopoietic multipotent progenitor cell
18
renal cortex interstitium
17
coronary artery
17
left kidney
17
left lung
17
ovary
16
CD14-positive monocyte
16
astrocyte
16
pancreatic ductal cell
16
stimulated activated CD8-positive, alpha-beta memory T cell
15
heart right ventricle
15
keratinocyte
15
spleen
14
CD4-positive, alpha-beta memory T cell
14
activated CD4-positive, alpha-beta T cell
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
body of pancreas
13
posterior cingulate gyrus
12
HCT116
12
MCF-7
12
T-helper 2 cell
12
erythroblast
12
fibroblast of lung
12
liver
12
pigmented layer of retina
11
T-helper 17 cell
11
foreskin keratinocyte
11
gastrocnemius medialis
11
psoas muscle
11
tibial nerve
10
Ammon's horn
10
GM12878
10
H9
10
Peyer's patch
10
dendritic cell
10
pancreas
10
pancreatic alpha cell
10
regulatory T cell
9
CD8-positive, alpha-beta memory T cell
9
fibroblast of cardiac tissue
9
hepatic stellate cell
9
induced pluripotent stem cell
9
mononuclear cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
sigmoid colon
9
subcutaneous adipose tissue
9
tongue
9
upper lobe of left lung
8
EndoC_BH1
8
Rhabdomyosarcoma
8
ascending aorta
8
caudate nucleus
8
endodermal cell
8
epithelial cell of proximal tubule
8
excitatory neuron
8
fibroblast cell line
8
mammary epithelial cell
8
neuron
8
pancreatic delta cell
8
right renal pelvis
7
22Rv1
7
GABAergic neuron
7
SJCRH30
7
SK-N-SH
7
activated T-cell
7
breast cancer cell
7
chorionic villus
7
colonic mucosa
7
diffuse intrinsic pontine glioma
7
embryonic stem cell
7
endocardial cell
7
endocrine pancreas
7
endothelial cell of umbilical vein
7
esophagus
7
esophagus muscularis mucosa
7
foreskin fibroblast
7
left cardiac atrium
7
lymphoblastoid cell line
7
pancreatic acinar cell
7
prostate gland
7
right atrium auricular region
7
skeletal muscle satellite cell
7
skeletal muscle tissue
7
trophoblast cell
7
urinary bladder
LNCaP clone FGC
6
SJSA1
6
WERI-Rb-1
6
adipose tissue
6
bronchial epithelial cell
6
colon epithelial cell
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endothelial cell of hepatic sinusoid
6
epithelial cell of prostate
6
esophagus squamous epithelium
6
foreskin melanocyte
6
gastric cancer cell
6
glomerular endothelial cell
6
kidney glomerular epithelial cell
6
mast cell
6
mesenchymal stem cell
6
neuronal stem cell
6
omental fat pad
6
osteoblast
6
pericyte cell
6
smooth muscle cell of the coronary artery
6
substantia nigra
5
ACHN
5
AG04449 cell
5
GM03348
5
HepG2
5
PC-9
5
SGBS preadipocytes
5
SK-N-MC
5
WI38
5
acute myeloid leukemia
5
cardiomyocytes (cardiac muscle cell)
5
cerebellar cortex
5
cerebellum
5
choroid plexus epithelial cell
5
endothelial cell of vascular tree
5
extended pluripotent stem (EPS) cells
5
fibroblast of dermis
5
fibroblast of the aortic adventitia
5
kidney loop of Henle thin ascending limb epithelial cell
5
left renal cortex interstitium
5
lower leg skin
5
mammary gland epithelial cell
5
pituitary stalk
5
right lobe of liver
5
sncg GABAergic interneuron
5
testis
5
thyroid gland
5
tibial artery
4
AG09319 cell
4
CMK
4
Classical Dendritic Cell
4
CyT49
4
Degenerative Proximal Tubule Epithelial Cell
4
GM04503
4
GM06990
4
HEK293
4
LNCAP
4
MM.1S
4
OCI-LY1
4
Parietal Epithelial Cell
4
Peritubular Capillary Endothelial Cell
4
SK-N-DZ
4
activated CD8-positive, alpha-beta memory T cell
4
activated naive CD4-positive, alpha-beta T cell
4
anterior cingulate cortex
4
aortic endothelial cell
Organ
2
epithelium
Date released
2
February, 2024
Software used
2
deltasvm
Lab
2
Bing Ren, UCSD
Project
2
AMP
Collection Tags
2
DGA
RFA
2
AMP
biosample_term_name!
LNCaP clone FGC
Showing 2 of 2 results
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Download
FileSet
DSR276IOG
released
Annotation file set
: Variant allelic effects annotation of Goblet cells from snATAC (sub-type2) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR809GFE
released
Annotation file set
: Variant allelic effects annotation of Goblet cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP