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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
accessible chromatin
1
chromatin state
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
14
endothelial cell of hepatic sinusoid
12
hepatocyte
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
8
pancreatic ductal cell
7
T-helper 1 cell
7
regulatory T cell
6
GM12878
6
H9
6
T-helper 17 cell
6
endothelial cell
6
fibroblast
6
left cardiac atrium
6
lymphocyte
6
olfactory receptor cell
6
skeletal muscle fiber
5
adipocyte
5
smooth muscle cell
4
B cell
4
CyT49
4
HUES8
4
heart left ventricle
4
iPSC derived cell line
4
islet of Langerhans
4
macrophage
4
mesenchymal stem cell
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic acinar cell
4
pancreatic beta cell
3
CD8-positive, alpha-beta T cell
3
Schwann cell
3
T-helper 2 cell
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
heart
3
hepatocyte(AFP)
3
memory B cell
3
monocyte
3
myofibroblast cell
3
skeletal muscle satellite cell
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type II muscle cell
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive, alpha-beta T cell
2
HCT116
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T cell
2
T follicular helper cell
2
adipose-derived stem cell
2
ascending aorta
2
basal cell
2
cardiac muscle cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
gamma-delta T cell
2
glial cell
2
goblet cell
2
left renal cortex interstitium
2
leukocyte
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neural cell
2
pancreas
2
pancreatic alpha cell
2
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
2
skeletal muscle myoblast
2
subcutaneous adipose tissue
2
thoracic aorta
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
B-1a B cell
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
activated CD4-positive, alpha-beta T cell
1
adipose tissue
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
aorta wall
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
bronchial goblet cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
central memory CD4-positive, alpha-beta T cell
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
epithelial cell of proximal tubule
1
erythroblast
1
excitatory neuron
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
heart right ventricle
1
hepatic stellate cell
1
hippocampal neuron
1
immature natural killer cell
1
inflammatory macrophage
1
keratinocyte
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
large intestine
1
left renal pelvis
1
liver
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte of B lineage (iPSC)
1
mammary gland epithelial cell
1
mast cell
1
megakaryocyte
1
mesothelial cell
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
natural killer cell
1
nephron tubule
1
neutrophil
1
occipital lobe
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pigmented layer of retina
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
preadipocyte
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right renal pelvis
1
skeletal muscle
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
superior temporal gyrus
Organ
4
heart
Life stage
3
adult
Date released
15
September, 2022
7
February, 2021
2
April, 2019
2
January, 2020
2
March, 2020
2
May, 2020
2
October, 2019
1
February, 2020
1
January, 2022
0
February, 2024
Software used
2
deltasvm
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
May, 2019
Showing 4 of 4 results
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Download
FileSet
DSR691DGU
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart left ventricle ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR714XJR
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart left ventricle fetal DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR571URP
released
Annotation file set
: Heart left ventricle accessible chromatin annotation of overlapping ATAC-seq sites from 2 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR491DJZ
released
Annotation file set
: ChromHMM 18-state model for adult Heart Left Ventricle from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP