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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
23
sigmoid colon
19
transverse colon
10
colonic mucosa
9
colon epithelial cell
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
7
SW480
6
HCT116
4
HCT-116 cell
4
RKO
4
rectum smooth muscle tissue
3
large intestine
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
Organ
3
intestine
3
large intestine
Life stage
embryonic
Date released
1
February, 2021
1
June, 2020
1
May, 2021
Software used
2
macs
1
abc
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
coronary artery
relevant_life_stage!
embryonic
Showing 3 of 3 results
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Download
FileSet
DSR856NEV
released
Annotation file set
: Histone modifications annotation for Digestive tract Colon from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232GSH
released
Annotation file set
: enhancer-gene predicton of large_intestine_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR820BBL
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Colon from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP