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Citing CMDGA
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Annotation type
1
chromatin state
1
gene expression
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
scRNA-seq
Available data
bed bed3+
2
bigWig
1
bed bed9
1
tsv
File set status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
17
liver
15
hepatocyte
6
right lobe of liver
4
endothelial cell of hepatic sinusoid
4
pancreatic endothelial cell
3
hepatic stellate cell
3
hepatocyte(AFP)
1
HepG2
1
HuH-7
1
HuH-7.5
Organ
3
connective tissue
3
liver
Life stage
3
adult
Date released
1
February, 2021
1
May, 2020
1
September, 2022
Software used
1
chromhmm
1
deltasvm
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
adipose tissue
files.file_type!
bed bed3+
Showing 3 of 3 results
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FileSet
DSR130QHH
released
Annotation file set
: Chromatin states for BSS00553 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR954PZY
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Hepatic Stellate Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR134FAU
released
Annotation file set
: Variant allelic effects of hepatic stellate cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP