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Schema
Citing CMDGA
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Annotation type
1
chromatin state
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
bed bed3+
2
bigWig
1
bed bed9
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
13
common myeloid progenitor, CD34-positive
9
CD4-positive, alpha-beta memory T cell
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
macrophage
7
mature neutrophil
6
T cell
6
monocyte
6
mononuclear cell
6
neutrophil
5
CD14-positive, CD16-negative classical monocyte
5
endothelial cell of umbilical vein
5
hepatocyte
5
regulatory T cell
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
alternatively activated macrophage
4
foreskin keratinocyte
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
natural killer cell
4
skeletal muscle myoblast
4
trophoblast cell
3
CD4-positive, alpha-beta T cell
3
blood cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
glomerular endothelial cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
mammary gland epithelial cell
3
naive T cell
3
neurosphere
3
skeletal muscle satellite cell
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroblast
2
fibroblast
2
fibroblast of breast
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
myoepithelial cell of mammary gland
2
pancreatic acinar cell
2
pancreatic ductal cell
2
renal cortical epithelial cell
2
skeletal muscle fiber
2
skin fibroblast
1
CD1c-positive myeloid dendritic cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
Leydig cell
1
T follicular helper cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
choroid plexus epithelial cell
1
endothelial cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
fat cell
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
glial cell
1
helper T cell
1
iris pigment epithelial cell
1
leukocyte
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary stem cell
1
mature eosinophil
1
mesangial cell
1
mesenchymal cell
1
mesenchymal stem cell
1
mesenchymal stem cell of adipose
1
microglial cell
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
neural cell
1
non-pigmented ciliary epithelial cell
1
osteoblast
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic cell
1
pancreatic delta cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pericardium fibroblast
1
pericyte cell
1
progenitor cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
retinal pigment epithelial cell
1
sensory neuron
1
skeletal muscle cell
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
stromal cell of bone marrow
1
type I muscle cell
1
type II muscle cell
Organ
2
connective tissue
2
liver
Life stage
2
adult
Date released
1
May, 2020
1
September, 2022
Software used
1
chromhmm
1
deltasvm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
files.file_type!
bed bed3+
tsv
month_released!
October, 2019
Showing 2 of 2 results
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Download
FileSet
DSR130QHH
released
Annotation file set
: Chromatin states for BSS00553 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR134FAU
released
Annotation file set
: Variant allelic effects of hepatic stellate cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP