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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
0
txt
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
16
endothelial cell
16
epithelial cell of proximal tubule
16
monocyte
14
fibroblast
14
glomerular endothelial cell
12
excitatory neuron
12
hepatocyte
12
macrophage
10
pericyte cell
9
pancreatic beta cell
8
astrocyte
8
pancreatic alpha cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
smooth muscle cell
6
B cell
6
endothelial cell of hepatic sinusoid
6
pancreatic acinar cell
6
pancreatic delta cell
5
CD8-positive, alpha-beta T cell
5
T cell
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
pancreatic ductal cell
4
glomerular visceral epithelial cell
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
memory B cell
4
natural killer cell
4
skeletal muscle satellite cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 17 cell
3
adult endothelial progenitor cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
osteoblast
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
3
skeletal muscle fiber
3
type I pneumocyte
2
Muller cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 2 cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glutamatergic neuron
2
hepatic stellate cell
2
keratinocyte
2
kidney inner medulla collecting duct intercalated cell
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesothelial cell
2
oligodendrocyte precursor cell
2
pancreatic stellate cell
2
plasma cell
2
plasmacytoid dendritic cell
2
renal principal cell
2
retinal pigment epithelial cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD4-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
alternatively activated macrophage
1
alveolar macrophage
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac muscle cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glial cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
immature natural killer cell
1
inflammatory macrophage
1
intestinal tuft cell
1
islet of Langerhans
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
leukocyte
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
mesenchymal stem cell
1
metanephros
1
microglial cell
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive regulatory T cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortical epithelial cell
1
renal intercalated cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
skeletal muscle cell
1
skeletal muscle fibroblast
1
skeletal muscle myoblast
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the brain vasculature
Life stage
1
fetal
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
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Download
FileSet
DSR241LRD
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatoblast from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE