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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
22
foreskin keratinocyte
21
coronary artery
21
keratinocyte
20
endothelial cell of umbilical vein
19
foreskin fibroblast
19
tibial artery
16
ascending aorta
16
endothelial cell of hepatic sinusoid
13
aorta
12
fibroblast of dermis
12
skin fibroblast
11
thoracic aorta
10
dermis blood vessel endothelial cell
10
lower leg skin
8
dermis lymphatic vessel endothelial cell
8
fibroblast of pulmonary artery
7
GM23248
7
pulmonary artery endothelial cell
7
smooth muscle cell of the coronary artery
6
iPS DF 4.7 Cell Line
6
skin of body
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Glomerular Capillary Endothelial Cell
5
Lymphatic Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
RPMI7951
5
SK-MEL-5
5
brain microvascular endothelial cell
5
fibroblast of the aortic adventitia
5
iPS DF 19.11
5
kidney capillary endothelial cell
4
aortic endothelial cell
4
dermis microvascular lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
olfactory neurosphere cell line
4
pancreatic endothelial cell
3
COLO829
3
epidermal melanocyte
3
suprapubic skin
2
basal cell of epidermis
2
capillary endothelial cell
2
endothelial cell of coronary artery
2
granular cell of epidermis
2
skin of forearm
2
skin of prepuce of penis
2
vein endothelial cell
1
brain microvascular endothelial cell
1
BJ
1
HGPS cell
1
abdominal aorta artery
1
aorta wall
1
aortic smooth muscle cell
1
circle of Willis
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
placental villus capillary endothelial cell
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
whole blood
Organ
5
skin of body
0
blood vessel
0
lymphatic vessel
0
nose
Life stage
3
newborn
1
postnatal
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR895SKI
released
Annotation file set
: Candidate regulatory elements for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985UCV
released
Annotation file set
: Target gene predictions for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR241URV
released
Annotation file set
: Chromatin states for BSS00731 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR584ZJC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE iPS DF 19.11
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR544HLF
released
Annotation file set
: enhancer-gene predicton of iPS_DF_19.11_Cell_Line-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP