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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
66
heart
63
stomach
56
kidney
55
brain
50
muscle of arm
49
lung
48
small intestine
46
adrenal gland
45
placenta
44
muscle of leg
41
large intestine
39
left lung
39
muscle of back
36
liver
36
thymus
34
right lung
33
retina
32
right kidney
30
renal pelvis
29
islet of Langerhans
29
renal cortex interstitium
27
left kidney
26
adipose tissue
24
heart left ventricle
24
spinal cord
22
spleen
20
pigmented layer of retina
17
sigmoid colon
16
tibial nerve
15
coronary artery
15
ovary
15
pancreas
15
thyroid gland
15
transverse colon
14
body of pancreas
14
caudate nucleus
14
gastrocnemius medialis
14
psoas muscle
13
heart right ventricle
13
muscle of trunk
13
tibial artery
12
chorionic villus
12
endocrine pancreas
12
right atrium auricular region
11
layer of hippocampus
11
testis
10
Peyer's patch
10
chorion membrane
10
frontal cortex
10
left cardiac atrium
10
skeletal muscle tissue
10
upper lobe of left lung
9
ascending aorta
9
omental fat pad
9
substantia nigra
9
temporal lobe
9
thoracic aorta
8
angular gyrus
8
aorta
8
breast epithelium
8
cerebellum
8
esophagus muscularis mucosa
8
left renal cortex interstitium
8
left renal pelvis
8
prostate gland
8
putamen
8
right renal cortex interstitium
8
right renal pelvis
8
subcutaneous adipose tissue
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus
7
esophagus squamous epithelium
7
eye
7
limb
7
mucosa of rectum
7
stomach smooth muscle
7
tongue
7
trophoblast
7
urinary bladder
7
vagina
6
Brodmann (1909) area 46
6
globus pallidus
6
lower leg skin
6
medulla oblongata
6
midbrain
6
muscle layer of colon
6
muscle layer of duodenum
6
occipital lobe
6
parathyroid adenoma
6
pons
6
skin of body
6
superior temporal gyrus
6
uterus
5
Ammon's horn
5
middle frontal gyrus
5
right cardiac atrium
4
cartilage tissue
4
cerebellar cortex
4
embryonic facial prominence
4
germinal matrix
4
inferior parietal cortex
4
rectum smooth muscle tissue
4
umbilical cord
3
amnion
3
arm bone
3
femur
3
gastroesophageal sphincter
3
germinal center
3
leg bone
3
mucosa of stomach
3
right lobe of liver
2
hindlimb muscle
2
muscle of leg
2
blood
2
cortex of kidney
2
pancreatic ductal cell
2
pancreatic stellate cell
2
tissue
1
left kidney
1
omental fat pad
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
amygdala
1
anterior cingulate cortex
1
beige adipocyte
1
breast
1
cardiac ventricle
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cerebrospinal fluid
1
colon sigmoid
1
cortex
1
crypt of Lieberkuhn
1
dorsolateral prefrontal cortex
1
endothelial cell
1
esophagus mucosa
1
fetal heart
1
forelimb muscle
1
glomerular epithelium
1
hypothalamus
1
mid-frontal lobe
1
minor salivary gland
1
nephron tubule
1
nucleus accumbens
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pituitary gland
1
prefrontal cortex
1
renal cortex tubule
1
renal glomerulus
1
skeletal muscle
1
subcutaneous abdominal adipose tissue
1
synovial joint
1
tissue-resident macrophage
1
type B pancreatic cell
1
visceral abdominal adipose tissue
1
white adipose tissue
Organ
4
brain
Life stage
3
adult
Date released
3
September, 2022
1
June, 2020
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
files.file_type!
tsv
month_released!
February, 2021
March, 2020
Showing 4 of 4 results
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Download
FileSet
DSR078FOK
released
Annotation file set
: Candidate regulatory elements for BSS00729 inferior parietal cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847XAH
released
Annotation file set
: Target gene predictions for BSS00729 inferior parietal cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR051UFI
released
Annotation file set
: Chromatin states for BSS00729 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR393BDV
released
Annotation file set
: Accessible chromatin annotation for Neural Inferior parietal cortex from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP