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Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
1
pCHi-C
1
scRNA-seq
Available data
3
bed bed9+
1
bed bed3+
1
tsv
1
txt
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
114
monocyte
46
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
27
CD14-positive monocyte
26
B cell
26
endothelial cell
23
CD4-positive, alpha-beta memory T cell
22
regulatory T cell
21
epithelial cell of proximal tubule
20
hepatocyte
19
glomerular endothelial cell
18
T-helper 1 cell
17
macrophage
16
T-helper 17 cell
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
fibroblast
15
foreskin fibroblast
15
foreskin keratinocyte
15
natural killer cell
14
CD4-positive, alpha-beta T cell
14
mononuclear cell
14
pancreatic ductal cell
14
trophoblast cell
13
T cell
13
fibroblast of lung
13
keratinocyte
13
mammary epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neutrophil
13
osteoblast
13
skeletal muscle myoblast
13
smooth muscle cell
12
T-helper 2 cell
11
pericyte cell
10
bronchial epithelial cell
10
endothelial cell of hepatic sinusoid
10
neurosphere
10
pancreatic acinar cell
10
pancreatic delta cell
9
fibroblast of dermis
9
glomerular visceral epithelial cell
9
mammary gland epithelial cell
9
mature neutrophil
9
pancreatic alpha cell
9
pancreatic beta cell
8
astrocyte
8
dermis blood vessel endothelial cell
7
epithelial cell of prostate
7
fibroblast of cardiac tissue
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
retinal pigment epithelial cell
7
skeletal muscle satellite cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
cardiac muscle cell
6
erythroblast
6
fibroblast of breast
6
glutamatergic neuron
6
hepatic stellate cell
6
kidney glomerular epithelial cell
6
kidney interstitial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle fiber
6
skin fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
choroid plexus epithelial cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
gamma-delta T cell
4
iris pigment epithelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
myofibroblast cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
astrocyte of the spinal cord
3
basal cell
3
blood cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
erythroid cell
Life stage
4
adult
Date released
3
May, 2022
1
August, 2021
1
May, 2020
Software used
3
chromhmm
1
chicago
1
r
1
seurat
Lab
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
4
AMP
1
AMP2
files.file_type!
bed bed9
bigWig
month_released!
August, 2020
Showing 5 of 5 results
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Download
FileSet
DSR950IZH
released
Annotation file set
: Chromatin state of inflammatory macrophage from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR894REO
released
Annotation file set
: Chromatin state of inflammatory macrophage from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR676EKV
released
Annotation file set
: Chromatin state of inflammatory macrophage from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR878WTQ
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for inflammatory macrophage
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR621NRD
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of inflammatory macrophage
Lab:
AMP-T2D consortium
Project:
AMP