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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
ATAC-seq
1
snATAC-seq
Available data
17
bed bed3+
11
tsv
5
bigWig
1
bigBed bed9
0
txt
File set status
5
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
17
endothelial cell
16
epithelial cell of proximal tubule
16
monocyte
16
retina
14
fibroblast
14
glomerular endothelial cell
13
excitatory neuron
13
pigmented layer of retina
12
hepatocyte
12
macrophage
10
kidney
10
pericyte cell
9
pancreatic beta cell
8
astrocyte
8
pancreatic alpha cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
pancreatic acinar cell
7
pancreatic ductal cell
7
smooth muscle cell
6
B cell
6
endothelial cell of hepatic sinusoid
6
pancreatic delta cell
5
CD8-positive, alpha-beta T cell
5
T cell
5
erythroblast
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
islet of Langerhans
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
4
coronary artery
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
memory B cell
4
natural killer cell
4
pancreatic stellate cell
4
retinal pigment epithelial cell
4
skeletal muscle satellite cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 17 cell
3
adult endothelial progenitor cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
heart
3
heart left ventricle
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
osteoblast
3
pancreas
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
3
skeletal muscle fiber
3
type I pneumocyte
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 2 cell
2
adipocyte
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glutamatergic neuron
2
hepatic stellate cell
2
keratinocyte
2
kidney inner medulla collecting duct intercalated cell
2
liver
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesothelial cell
2
oligodendrocyte precursor cell
2
omental fat pad
2
plasma cell
2
plasmacytoid dendritic cell
2
renal principal cell
2
right atrium auricular region
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
hindlimb muscle
1
Ammon's horn
1
B-1 B cell
1
B-2 B cell
1
CD4-positive, alpha-beta T cell
1
EndoC_BH1
1
HepG2
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
alternatively activated macrophage
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
forelimb muscle
1
foveolar cell of stomach
1
frontal cortex
1
gastric goblet cell
1
glial cell
1
globus pallidus
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
inflammatory macrophage
1
intestinal tuft cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
leukocyte
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
Organ
5
pancreas
Life stage
4
adult
Date released
2
May, 2020
1
November, 2019
1
November, 2021
1
September, 2022
Software used
3
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
biosample_term_name!
luminal epithelial cell of mammary gland
Showing 5 of 5 results
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Download
FileSet
DSR217ZJA
released
Annotation file set
: Accessible chromatin annotation of Fetal Pancreatic Islet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR941LPG
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 5 T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XQN
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 38 non-diabetic samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935CED
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 43 non-diabetic and T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR507522
released
Annotation file set
: Merged ATAC-seq sites in islets for 23 samples including 4 from Bing Ren at UCSD, 2 from Stephen Parker at UMich, and 17 from Mark McCarthy at Oxford (HP1507 and HP1507UW)
Lab:
AMP-T2D consortium
Project:
AMP