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Schema
Citing CMDGA
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Embeddings type
3
Accessible chromatin
1
Gene expression
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
1
10X scATAC-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
2
h5ad
1
rds
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
3
islet of Langerhans
1
carotid canal
lung
1
pancreas
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
1
tissues
Tissue term
3
pancreas
1
blood
Organ
3
pancreas
1
blood
1
bodily fluid
Date released
1
August, 2021
1
February, 2021
1
March, 2024
Lab
3
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
biosample_term_name!
lung
organ_slims!
eye
mammary gland
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D