Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
5
pancreatic acinar cell
5
pancreatic ductal cell
5
pancreatic stellate cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
3
pancreatic quiescent stellate cell
2
islet of Langerhans
2
pancreatic polypeptide-secreting cell
1
CD8-positive, alpha-beta T cell
1
Pancreatic islets
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
conventional dendritic cell
1
endothelial cell
1
macrophage
1
megakaryocyte
1
memory B cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
plasmacytoid dendritic cell
1
purified protein and synthetic DNA oligo binding assay
1
regulatory T cell
1
stellate neuron
Organ
2
pancreas
Date released
1
April, 2019
1
January, 2021
1
March, 2020
Software used
1
chromhmm
1
cicero
macs
1
spp
Lab
71
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
software_used.software.name!
macs
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP