Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Embeddings type
4
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
10X scRNA-seq
2
10X snATAC-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
2
h5ad
1
mtx
1
rds
File set status
4
released
Organism
3
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
4
heart
4
islet of Langerhans
3
artery
3
skeletal muscle
2
liver
2
lung
2
pancreas
2
skeletal muscle tissue
1
carotid canal
1
hypothalamus
1
kidney
1
peripheral blood mononuclear cell
1
subcutaneous adipose tissue
1
tissues
1
visceral abdominal adipose tissue
Tissue term
4
pancreas
1
blood
Organ
4
pancreas
1
blood
1
bodily fluid
Date released
1
August, 2021
1
February, 2021
1
March, 2024
1
October, 2024
Lab
3
Kyle Gaulton, UCSD
1
Franck Mauvais-Jarvis Lab
Project
2
AMP
1
T1D
1
community
RFA
2
AMP
1
T1D
1
community
embeddings_underlying_assay!
10X scRNA-seq
Showing 4 of 4 results
table-tab-icon
matrix-icon
FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D