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Citing CMDGA
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Assay category
2
3D chromatin structure
2
DNA accessibility
1
Transcription
Assay
2
ATAC-seq
2
Hi-C
1
total RNA-seq
Project
5
AMP
RFA
5
AMP2
Experiment status
5
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Organ
5
pancreas
Life stage
5
adult
Available data
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
bigWig
1
fastq
1
hic
1
tsv
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
125
Library made from
4
DNA
1
RNA
Date released
2
August, 2021
2
March, 2019
1
October, 2017
Lab
398
AMP-T2D consortium
46
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Replication type
5
anisogenic
files.platform.term_name!
Illumina HiSeq 2500
organ_slims!
liver
Showing 5 of 5 results
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Experiment
DSR595NST
released
total RNA-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (55 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR140792
released
ATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (41 year) and male adult (59 years)
Lab:
Stephen Parker, UMich
Project:
AMP
Experiment
TSTSR081148
released
ATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (59 years) and male adult (35 years) and male adult (55 years) and male adult (57 years)
Lab:
Bing Ren, UCSD
Project:
AMP