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Embeddings type
4
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
6
umap
Underlying Assay
2
10X scRNA-seq
2
10X snATAC-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
3
h5ad
2
mtx
1
rds
File set status
6
released
Organism
3
Homo sapiens
Biosample type
6
tissue
2
primary cell
Biosample term
6
islet of Langerhans
4
liver
4
pancreas
3
artery
3
heart
3
lung
3
skeletal muscle
2
kidney
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
2
subcutaneous adipose tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
1
visceral fat
Tissue term
6
pancreas
2
blood
Organ
6
pancreas
2
blood
2
bodily fluid
Date released
2
August, 2021
2
October, 2024
1
February, 2021
1
March, 2024
Lab
4
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
Project
2
AMP
2
T1D
2
community
RFA
2
AMP
2
T1D
2
community
Showing 6 of 6 results
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FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D