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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
72
heart
65
muscle of arm
61
brain
57
lung
55
muscle of leg
54
muscle of back
54
placenta
54
stomach
53
large intestine
52
left lung
50
kidney
48
small intestine
44
right lung
42
right kidney
39
thymus
38
renal cortex interstitium
37
renal pelvis
36
left kidney
32
adrenal gland
28
spinal cord
19
trophoblast cell
16
chorionic villus
16
muscle of trunk
13
neural progenitor cell
13
neurosphere
12
left renal cortex interstitium
12
retina
11
right renal cortex interstitium
10
left renal pelvis
10
right renal pelvis
9
H9
9
heart left ventricle
9
liver
8
endodermal cell
8
eye
8
tongue
8
trophoblast
7
limb
6
cardiac muscle cell
6
chorion membrane
6
heart right ventricle
6
mesodermal cell
6
skin fibroblast
5
HEK293
5
germinal matrix
5
left cardiac atrium
5
neural cell
5
spleen
5
testis
4
ELF-1
4
H1-hESC
4
HUES48
4
HUES6
4
HUES64
4
IMR-90
4
UCSF-4
4
amnion
4
ectodermal cell
4
femur
4
hepatocyte
4
islet precursor cell
4
kidney capillary endothelial cell
4
mesenchymal stem cell
4
mesendoderm
4
neuron
4
ovary
4
smooth muscle cell
4
umbilical cord
3
AG04449 cell
3
AG04450 cell
3
ES-I3
3
H7-hESC
3
HEK293T
3
HTR-8/Svneo
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
arm bone
3
cardiac mesoderm primordium
3
cardiac precursors (cardiac muscle cell)
3
embryonic facial prominence
3
fibroblast of cardiac tissue
3
leg bone
3
skin of body
3
urinary bladder
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
neuroepithelial stem cell
2
neuronal stem cell
2
placental basal plate
1
A673
1
AG04449
1
AG04450
1
BE2C
1
CMK
1
D721Med
1
DND-41
1
Daoy
1
G401
1
GM20000
1
H1
1
H7
1
HepG2
1
Jurkat, Clone E6-1
1
MG63
1
SJCRH30
1
SK-N-MC
1
WERI-Rb-1
1
aorta
1
aortic valve
1
astrocyte
1
cardiac fibroblast
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
ecto neural progenitor cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
forelimb muscle
1
glomerular visceral epithelial cell
1
hindlimb muscle
1
left leg bone
1
mid-neurogenesis radial glial cells
1
mitral valve
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
psoas muscle
1
pulmonary valve
1
radial glial cell
1
right arm bone
1
right cardiac atrium
1
sigmoid colon
1
tricuspid valve
Life stage
4
embryonic
0
young adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR409USF
released
Annotation file set
: Candidate regulatory elements for BSS00758 islet precursor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR664STB
released
Annotation file set
: Target gene predictions for BSS00758 islet precursor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR754TAY
released
Annotation file set
: Chromatin states for BSS00758 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR635HDH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE islet precursor cell
Lab:
AMP-T2D consortium
Project:
AMP