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Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
1
accessible chromatin
Annotation Category
4
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
snDropSeq
1
scRNA-seq
1
snATAC-seq
Available data
4
tsv
4
txt
1
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
102
monocyte
40
common myeloid progenitor, CD34-positive
23
B cell
19
CD8-positive, alpha-beta T cell
18
hepatocyte
16
epithelial cell of proximal tubule
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
14
endothelial cell of hepatic sinusoid
14
natural killer cell
13
glomerular endothelial cell
12
CD14-positive monocyte
12
T-helper 1 cell
12
regulatory T cell
10
T cell
9
CD4-positive, alpha-beta memory T cell
9
endothelial cell
9
kidney tubule cell
8
CD4-positive, alpha-beta T cell
8
fibroblast of breast
8
myoepithelial cell of mammary gland
7
T-helper 2 cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
hepatic stellate cell
6
mammary gland epithelial cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
skeletal muscle satellite cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mature neutrophil
5
neutrophil
5
pancreatic alpha cell
5
pancreatic beta cell
5
skeletal muscle myoblast
4
T-helper 17 cell
4
fibroblast of dermis
4
glutamatergic neuron
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
pancreatic delta cell
4
peripheral blood mononuclear cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
adult endothelial progenitor cell
3
alternatively activated macrophage
3
fibroblast of cardiac tissue
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
3
macrophage
3
mammary stem cell
3
mesangial cell
3
pancreatic polypeptide-secreting cell
2
cardiac fibroblast
2
CD14-positive, CD16-negative classical monocyte
2
Kupffer cell
2
T-cell
2
articular chondrocyte
2
fibroblast
2
gamma-delta T cell
2
kidney inner medulla collecting duct intercalated cell
2
mammary epithelial cell
2
mesenchymal stem cell
2
osteoblast
2
pancreatic acinar cell
2
pancreatic ductal cell
2
renal principal cell
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
Schwann cell
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
cholangiocyte
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
erythroid lineage cell
1
gabaergic neuron
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mast cell
1
mature B cell
1
mature eosinophil
1
mesenchymal stem cell of adipose
1
microglial cell/astrocyte
1
neuron
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic endothelial cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
plasma cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortical epithelial cell
1
renal intercalated cell
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
Organ
5
epithelium
5
kidney
Life stage
5
adult
4
unknown
Date released
3
February, 2021
2
August, 2021
Software used
4
r
1
macs
1
seurat
Lab
3
AMP-T2D consortium
2
Katalin Susztak, Upenn
Project
5
AMP
RFA
3
AMP
2
AMP2
biosample_term_name!
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR926ZNY
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR683CUH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR149YFI
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for kidney distal convoluted tubule epithelial cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR197RLC
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Distal convoluted tubule
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR919NVL
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP