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Schema
Citing CMDGA
Clear Filters
Annotation type
6
gene expression
1
accessible chromatin
Annotation Category
6
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
scRNA-seq
3
snDropSeq
1
ATAC-seq
Available data
6
tsv
3
txt
1
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
0
cell line
Biosample term
23
epithelial cell of proximal tubule
21
glomerular endothelial cell
13
glomerular visceral epithelial cell
10
kidney tubule cell
9
HEK293
8
kidney glomerular epithelial cell
8
renal cortical epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
ACHN
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Caki2
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
RCC 7860
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
4
G401
4
kidney connecting tubule epithelial cell
4
renal cell carcinoma
3
HEK293T
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
kidney inner medulla collecting duct intercalated cell
2
renal principal cell
2
ureteric bud
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
Organ
7
kidney
Life stage
4
adult
3
fetal
Date released
6
February, 2021
1
August, 2021
Software used
6
r
1
macs
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
organ_slims!
extraembryonic component
Showing 7 of 7 results
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Download
FileSet
DSR611DVH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924MTE
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795NZZ
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Stroma cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR661ZJU
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of IPC from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR072UTY
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of ICb from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924ZRB
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of ICa from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708CXZ
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP