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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
31
kidney
23
epithelial cell of proximal tubule
21
glomerular endothelial cell
13
glomerular visceral epithelial cell
10
kidney tubule cell
8
kidney glomerular epithelial cell
8
renal cortical epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
ACHN
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Caki2
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
RCC 7860
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
renal cell carcinoma
4
G401
4
HEK293
4
cortex of kidney
4
kidney connecting tubule epithelial cell
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
renal pelvis
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
left renal pelvis
2
metanephros
2
renal connecting tubule
2
renal cortex interstitium
2
renal principal cell
2
right renal pelvis
2
ureteric bud
1
left kidney
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
Organ
4
kidney
2
ureter
Life stage
embryonic
2
fetal
Date released
2
January, 2020
2
May, 2020
Software used
2
deltasvm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
vasculature
relevant_life_stage!
embryonic
Showing 4 of 4 results
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Download
FileSet
DSR958SVL
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney renal cortex intersitium DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR694REX
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney left renal pelvis DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR458LRF
released
Annotation file set
: Accessible chromatin annotation of kidney left renal pelvis from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR241XQN
released
Annotation file set
: Accessible chromatin annotation of kidney renal cortex interstitium from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP