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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
11
in vitro differentiated cells
7
primary cell
1
stem cell
Biosample term
29
fibroblast
22
pericyte cell
17
osteoblast
16
fibroblast of lung
16
foreskin fibroblast
12
fibroblast of cardiac tissue
12
fibroblast of dermis
9
hepatic stellate cell
9
skin fibroblast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
pancreatic stellate cell
7
mesangial cell
7
mesenchymal stem cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
4
adipocyte
4
adult endothelial progenitor cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
preadipocyte
4
stromal cell of bone marrow
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
brain pericyte
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
2
articular chondrocyte
2
columnar chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
luteal cell
2
stromal cell
1
activated pancreatic stellate cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
Organ
7
connective tissue
Life stage
2
adult
1
unknown
Date released
3
February, 2024
1
February, 2021
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
1
encode-ccres
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
organ_slims!
testis
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP