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Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
54
A549
30
common myeloid progenitor, CD34-positive
27
hematopoietic multipotent progenitor cell
18
B cell
18
K562
18
adipose tissue
18
adrenal gland
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
liver
15
mononuclear cell
15
stomach
12
body of pancreas
12
gastrocnemius medialis
12
sigmoid colon
12
spleen
12
thyroid gland
12
transverse colon
9
CD14-positive monocyte
9
CD4-positive, alpha-beta memory T cell
9
HeLa-S3
9
Peyer's patch
9
T cell
9
caudate nucleus
9
endocrine pancreas
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
natural killer cell
9
ovary
9
psoas muscle
9
tibial nerve
9
upper lobe of left lung
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
T-helper 1 cell
6
T-helper 2 cell
6
T47D
6
angular gyrus
6
aorta
6
ascending aorta
6
breast epithelium
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
fibroblast of breast
6
frontal cortex
6
heart left ventricle
6
kidney
6
kidney tubule cell
6
lower leg skin
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
omental fat pad
6
pancreas
6
parathyroid adenoma
6
prostate gland
6
regulatory T cell
6
right atrium auricular region
6
skeletal muscle tissue
6
small intestine
6
stomach smooth muscle
6
substantia nigra
6
temporal lobe
6
testis
6
thoracic aorta
6
tibial artery
6
vagina
3
8988T
3
A172
3
ACC112
3
ACHN
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
Ammon's horn
3
C4-2B
3
COLO829
3
Caco-2 cell
3
Caki2
3
DOHH2
3
GM04503
3
GM04504
3
GM10248
3
GM10266
3
GM12875
3
GM12878
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
LHCN-M2
3
LoVo cell
3
Loucy
3
M059J
3
MM.1S
3
NB4
3
NCI-H226 cell
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJSA1
3
SK-MEL-5
3
SU-DHL-6
3
SW480
3
VCaP cell
3
adipocyte
3
bipolar neuron
3
cerebellar cortex
3
dermis blood vessel endothelial cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
gastroesophageal sphincter
3
globus pallidus
3
heart
3
heart right ventricle
3
hepatic stellate cell
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
iPS-NIHi11
3
iPS-NIHi7
3
inferior parietal cortex
3
kidney glomerular epithelial cell
3
luminal epithelial cell of mammary gland
3
lung
3
mammary stem cell
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
middle frontal gyrus
3
mucosa of stomach
3
occipital lobe
3
olfactory neurosphere cell line
3
pons
3
putamen
3
rectum smooth muscle tissue
3
renal cell carcinoma
3
right cardiac atrium
3
right lobe of liver
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
superior temporal gyrus
3
urinary bladder
3
uterus
1
islet of Langerhans
1
pancreatic delta cell
Organ
3
lung
Life stage
42
embryonic
3
adult
3
child
Date released
3
September, 2022
2
February, 2021
1
March, 2024
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
Rhabdomyosarcoma
Showing 3 of 3 results
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Download
FileSet
DSR655KYY
released
Annotation file set
: Candidate regulatory elements for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR696RKA
released
Annotation file set
: Target gene predictions for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR482VBY
released
Annotation file set
: Chromatin states for BSS01190 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP