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Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bed bed9
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
primary cell
4
tissue
Biosample term
54
A549
27
hematopoietic multipotent progenitor cell
23
retina
21
liver
20
adipose tissue
20
pigmented layer of retina
19
adrenal gland
18
K562
18
body of pancreas
18
tibial nerve
16
caudate nucleus
16
islet of Langerhans
16
stomach
15
MCF-7
15
omental fat pad
13
coronary artery
13
right atrium auricular region
13
spleen
13
tibial artery
12
ascending aorta
12
cerebellum
12
frontal cortex
12
gastrocnemius medialis
12
heart left ventricle
12
sigmoid colon
12
thyroid gland
12
transverse colon
11
pancreas
11
subcutaneous adipose tissue
11
substantia nigra
10
ovary
10
psoas muscle
10
putamen
9
Ammon's horn
9
HeLa-S3
9
Peyer's patch
9
aorta
9
endocrine pancreas
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
upper lobe of left lung
8
angular gyrus
8
right lobe of liver
8
temporal lobe
7
kidney
7
testis
7
thoracic aorta
7
vagina
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
T47D
6
breast epithelium
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
lower leg skin
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
parathyroid adenoma
6
prostate gland
6
skeletal muscle tissue
6
small intestine
6
stomach smooth muscle
5
C1 segment of cervical spinal cord
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
hypothalamus
5
left ventricle myocardium
5
medulla oblongata
5
midbrain
5
middle frontal gyrus
5
nucleus accumbens
5
pons
5
right cardiac atrium
5
superior temporal gyrus
4
GM12878
4
cartilage tissue
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
heart
4
heart right ventricle
4
lung
4
occipital lobe
4
uterus
3
8988T
3
A172
3
ACC112
3
ACHN
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
C4-2B
3
COLO829
3
Caco-2 cell
3
Caki2
3
DOHH2
3
GM04503
3
GM04504
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
LHCN-M2
3
LoVo cell
3
Loucy
3
M059J
3
MM.1S
3
NB4
3
NCI-H226 cell
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJSA1
3
SK-MEL-5
3
SU-DHL-6
3
SW480
3
VCaP cell
3
adipocyte
3
bipolar neuron
3
gastroesophageal sphincter
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
iPS-NIHi11
3
iPS-NIHi7
3
inferior parietal cortex
3
mesenchymal stem cell
3
mucosa of stomach
3
olfactory neurosphere cell line
3
rectum smooth muscle tissue
3
renal cell carcinoma
3
urinary bladder
2
blood
2
cardiomyocytes (cardiac muscle cell)
2
lymphocyte of B lineage (iPSC)
1
A-673 cell
1
aorta wall
1
bladder
1
breast - mammary tissue
1
cells - EBV-transformed lymphocytes
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
kidney - cortex
1
kidney - medulla
1
minor salivary gland
1
nephron tubule
1
pituitary
1
prostate
1
renal glomerulus
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
Organ
4
lung
Life stage
42
embryonic
4
adult
3
child
Date released
3
September, 2022
February, 2021
1
March, 2024
Software used
3
r
1
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_type!
primary cell
month_released!
February, 2021
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR315SRJ
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Lung.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR655KYY
released
Annotation file set
: Candidate regulatory elements for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR696RKA
released
Annotation file set
: Target gene predictions for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR482VBY
released
Annotation file set
: Chromatin states for BSS01190 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP