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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
chromatin state
1
eQTL
Annotation Category
2
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
RNA-seq
1
ChIP-seq
Available data
bed bed3+
15
bigWig
3
tsv
1
bed bed9
File set status
4
released
Genome assembly (visualization)
2
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
18
A549
16
epithelial cell of proximal tubule
16
monocyte
13
glomerular endothelial cell
13
hepatocyte
13
subcutaneous adipose tissue
10
adipose tissue
10
body of pancreas
10
common myeloid progenitor, CD34-positive
10
tibial nerve
9
caudate nucleus
9
hematopoietic multipotent progenitor cell
9
islet of Langerhans
9
liver
9
omental fat pad
8
ascending aorta
8
coronary artery
8
right atrium auricular region
8
tibial artery
7
adrenal gland
7
cerebellum
7
endothelial cell
7
frontal cortex
7
kidney loop of Henle thin ascending limb epithelial cell
7
putamen
7
regulatory T cell
7
substantia nigra
6
Ammon's horn
6
B cell
6
K562
6
T-helper 1 cell
6
right lobe of liver
6
stomach
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD8-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
mononuclear cell
5
natural killer cell
5
nucleus accumbens
5
spleen
4
T-helper 17 cell
4
angular gyrus
4
aorta
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of hepatic sinusoid
4
gastrocnemius medialis
4
glomerular visceral epithelial cell
4
heart left ventricle
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
ovary
4
sigmoid colon
4
temporal lobe
4
thyroid gland
4
transverse colon
3
CD14-positive monocyte
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
3
T cell
3
adult endothelial progenitor cell
3
alternatively activated macrophage
3
cartilage tissue
3
endocrine pancreas
3
endometrium adenocarcinoma
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney interstitial cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
layer of hippocampus
3
mesangial cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neutrophil
3
psoas muscle
3
right cardiac atrium
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
upper lobe of left lung
3
vagina
3
visceral abdominal adipose tissue
2
Brodmann (1909) area 46
2
CD14-positive, CD16-negative classical monocyte
2
Kupffer cell
2
LNCaP clone FGC
2
T-helper 2 cell
2
T47D
2
adipocyte
2
articular chondrocyte
2
blood
2
breast epithelium
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
gamma-delta T cell
2
globus pallidus
2
heart
2
kidney inner medulla collecting duct intercalated cell
2
lower leg skin
2
lung
2
macrophage
2
mammary gland epithelial cell
2
medulla oblongata
2
mesenchymal stem cell
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive T cell
2
pancreas
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
pons
2
prostate gland
Organ
2
eye
2
lung
Life stage
17
embryonic
4
adult
1
child
Date released
2
February, 2020
1
March, 2024
1
September, 2022
Software used
2
r
1
chromhmm
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
files.file_type!
bed bed3+
Showing 4 of 4 results
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Download
FileSet
DSR315SRJ
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Lung.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR482VBY
released
Annotation file set
: Chromatin states for BSS01190 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR010VOR
released
Annotation file set
: cis-eQTL of eye from EyeGEx
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180OYG
released
Annotation file set
: Gene expression summary of TPM of eye from EyeGEx
Lab:
AMP-T2D consortium
Project:
AMP