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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
snATAC-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
11
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
9
pancreatic ductal cell
9
pancreatic stellate cell
8
pancreatic acinar cell
6
endothelial cell
5
macrophage
5
natural killer cell
5
pancreatic endothelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
3
B cell
3
endothelial cell of lymphatic vessel
3
fibroblast
3
mast cell
3
pancreatic quiescent stellate cell
2
CD8-positive, alpha-beta T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
conventional dendritic cell
2
endocardial cell
2
islet of Langerhans
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non-classical monocyte
2
pericyte cell
2
plasmacytoid dendritic cell
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
smooth muscle cell
2
stellate neuron
1
Pancreatic islets
1
Schwann cell
1
cholangiocyte
1
dendritic cell
1
erythrocyte
1
hepatic stellate cell
1
hepatocyte
1
myofibroblast cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic immune cell
1
purified protein and synthetic DNA oligo binding assay
1
tissue-resident macrophage
1
type B pancreatic cell
Disease term
2
heart failure
1
liver disease
Life stage
3
adult
Date released
3
May, 2024
2
January, 2021
Software used
1
cicero
1
macs
Lab
14
Bing Ren, UCSD
13
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
1
Katalin Susztak, Upenn
1
Xin Sun, UCSD
Project
3
AMP
2
T1D
RFA
3
AMP2
2
T1D
biosample_term_name!
cardiomyocytes
Showing 5 of 5 results
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Download
FileSet
DSR460NJI
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of macrophage derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR231ITI
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of macrophage derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR987KAF
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of macrophage derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR104LZJ
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_macrophage
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR097XAH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_macrophage
Lab:
Kyle Gaulton, UCSD
Project:
T1D