Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
128
monocyte
48
CD8-positive, alpha-beta T cell
29
fibroblast
26
macrophage
20
smooth muscle cell
19
CD14-positive monocyte
19
pericyte cell
17
regulatory T cell
16
B cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
14
T-helper 1 cell
14
astrocyte
14
osteoblast
13
foreskin fibroblast
12
T-helper 17 cell
12
excitatory neuron
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
erythroblast
10
T cell
10
natural killer cell
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
mature neutrophil
9
neutrophil
9
skeletal muscle fiber
8
T-helper 2 cell
8
glutamatergic neuron
7
cardiac muscle cell
7
fibroblast of lung
7
kidney interstitial cell
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
type I muscle cell
7
type II muscle cell
6
T-cell
6
alternatively activated macrophage
6
gamma-delta T cell
6
hepatic stellate cell
6
mast cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
plasma cell
6
trophoblast cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
myofibroblast cell
4
CD1c-positive myeloid dendritic cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
neurosphere
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
enteric neuron
3
erythroid cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
foreskin melanocyte
3
glial cell
3
kidney cell
3
kidney resident macrophage
3
mammary epithelial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
skeletal muscle cell
3
skin fibroblast
3
smooth muscle cell of the brain vasculature
3
smooth muscle cell of the coronary artery
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
alveolar macrophage
2
articular chondrocyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
effector memory CD4-positive, alpha-beta T cell
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of peridontal ligament
2
fibroblast of the aortic adventitia
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
megakaryocyte
2
melanocyte
2
mononuclear cell
2
myeloid dendritic cell
2
neural cell
2
neuron
2
neuronal stem cell
2
pancreatic endocrine cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
regular atrial cardiac myocyte
2
renal proximal tubule cell
2
skeletal muscle fibroblast
2
small cell ovarian carcinoma cell
2
somatic muscle myotube
2
stromal cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
Organ
2
bone element
2
bone marrow
Date released
January, 2021
1
May, 2020
1
November, 2021
Software used
1
chicago
1
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
month_released!
January, 2021
September, 2022
organ_slims!
epithelium
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR326TXQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Megakaryocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR992TVD
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of megakaryocyte
Lab:
AMP-T2D consortium
Project:
AMP