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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
pCHi-C
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
25
tibial nerve
22
foreskin keratinocyte
19
foreskin fibroblast
19
tibial artery
18
gastrocnemius medialis
10
lower leg skin
9
foreskin melanocyte
8
limb
7
GM23248
5
gastrocnemius medialis(Muscle - Skeletal)
4
EH
4
EL
4
ELR
4
femur
4
megakaryocyte
4
stromal cell of bone marrow
3
arm bone
3
leg bone
3
mononuclear cell of bone marrow
2
hindlimb muscle
2
muscle of leg
2
forelimb muscle
2
skin of forearm
2
skin of prepuce of penis
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
bone marrow cell
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
fibroblast of arm
1
hindlimb muscle
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
skin - sun exposed (lower leg)
Organ
4
bone element
4
bone marrow
0
limb
0
penis
Date released
2
January, 2021
1
May, 2020
1
November, 2021
Software used
2
macs
1
chicago
1
cicero
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
T1D
1
AMP
1
ENCODE
RFA
2
T1D
1
AMP
1
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR326TXQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Megakaryocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR345BXM
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR213MXZ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR992TVD
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of megakaryocyte
Lab:
AMP-T2D consortium
Project:
AMP