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Getting started
Schema
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
snATAC-seq
1
RNA-seq
Available data
2
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
2636
whole blood
132
monocyte
90
fibroblast
89
heart
86
head of caudate nucleus
85
stomach
84
endothelial cell
72
brain
72
macrophage
71
A549
70
kidney
69
smooth muscle cell
67
muscle of arm
67
placenta
66
CD8-positive, alpha-beta T cell
66
HeLa-S3
65
lung
64
T-cell
63
adrenal gland
62
small intestine
59
B cell
58
dorsolateral prefrontal cortex
57
muscle of leg
56
CD4-positive, alpha-beta T cell
55
large intestine
55
stimulated activated CD4-positive, alpha-beta T cell
54
left lung
54
muscle of back
52
H1-hESC
52
common myeloid progenitor, CD34-positive
48
posterior cingulate gyrus
46
hepatocyte
46
thymus
45
K562
45
natural killer cell
45
neural progenitor cell
45
right lung
44
T cell
44
hematopoietic multipotent progenitor cell
42
right kidney
41
adipocyte
41
liver
40
renal cortex interstitium
40
renal pelvis
38
retina
37
heart left ventricle
36
islet of Langerhans
36
left kidney
35
CD14-positive monocyte
34
pericyte
33
activated CD4-positive, alpha-beta T cell
32
CD4-positive, alpha-beta memory T cell
32
glutamatergic neuron
32
spinal cord
29
T-helper 1 cell
29
astrocyte
29
cardiac muscle cell
29
spleen
27
adipose tissue
27
pancreatic ductal cell
27
stimulated activated CD8-positive, alpha-beta memory T cell
26
T-helper 17 cell
26
heart right ventricle
25
CD8-positive, alpha-beta memory T cell
25
MCF-7
25
naive thymus-derived CD4-positive, alpha-beta T cell
25
neuron
25
ovary
25
pancreas
25
tibial nerve
24
body of pancreas
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
keratinocyte
24
pericyte cell
24
regulatory T cell
23
T-helper 2 cell
23
trophoblast cell
22
GABAergic neuron
22
naive thymus-derived CD8-positive, alpha-beta T cell
22
psoas muscle
21
EndoC_BH1
21
HCT116
20
coronary artery
20
gastrocnemius medialis
20
pigmented layer of retina
20
right atrium auricular region
20
sigmoid colon
20
tibial artery
19
HFFc6
19
caudate nucleus
19
endocardial cell
19
thyroid gland
17
H9
17
endothelial cell of umbilical vein
17
erythroblast
17
frontal cortex
17
mononuclear cell
17
pancreatic beta cell
17
transverse colon
17
upper lobe of left lung
16
endothelial cell of hepatic sinusoid
16
mast cell
16
mesenchymal stem cell
16
omental fat pad
15
HepG2
15
activated T-cell
15
foreskin keratinocyte
15
muscle of trunk
15
pancreatic acinar cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle satellite cell
15
testis
14
Peyer's patch
14
activated CD8-positive, alpha-beta memory T cell
14
ascending aorta
14
fibroblast of lung
14
foreskin fibroblast
14
hepatic stellate cell
14
pancreatic alpha cell
14
subcutaneous adipose tissue
14
thyroid follicular cell
13
GM12878
13
cerebellum
13
excitatory neuron
13
fibroblast of cardiac tissue
13
naive B cell
13
neutrophil
13
right lobe of liver
13
substantia nigra
12
Ammon's horn
12
embryonic stem cell
12
endocrine pancreas
12
fibroblast of dermis
12
left cardiac atrium
12
mammary gland epithelial cell
12
putamen
12
skeletal muscle myoblast
11
aorta
11
chorionic villus
11
left renal cortex interstitium
11
progenitor cell
11
type B pancreatic cell
10
dermis blood vessel endothelial cell
10
epithelial cell of proximal tubule
10
inflammatory macrophage
10
kidney tubule cell
10
left renal pelvis
10
mesothelial cell
10
osteoblast
10
pancreatic stellate cell
10
right renal pelvis
10
skeletal muscle tissue
9
B Cell
9
SK-N-SH
9
breast epithelium
9
glomerular endothelial cell
9
layer of hippocampus
9
limb
9
megakaryocyte
9
memory B cell
9
oligodendrocyte
9
pancreatic A cell
9
progenitor cell of endocrine pancreas
9
right cardiac atrium
9
right renal cortex interstitium
9
skin fibroblast
9
thoracic aorta
8
IMR-90
8
SK-N-DZ
8
colon epithelial cell
8
glomerular visceral epithelial cell
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
temporal lobe
8
tongue
8
trophoblast
8
vagina
7
GM03348
7
LNCaP clone FGC
7
NAMALWA cell
7
Schwann cell
7
T47D
7
WERI-Rb-1
7
cell of skeletal muscle
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
effector memory CD8-positive, alpha-beta T cell
7
endometrium adenocarcinoma
7
epithelial cell of esophagus
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
Organ
3
connective tissue
Life stage
1
fetal
Date released
February, 2021
2
November, 2021
1
February, 2020
Software used
2
macs
1
r
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
Collection Tags
2
AMP
2
T2DKP
1
ENCODE
RFA
2
ENCODE3
1
AMP
month_released!
February, 2021
Showing 3 of 3 results
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Download
FileSet
DSR722AXI
released
Annotation file set
: Accessible chromatin annotation of Fetal Mesangial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR044AFP
released
Annotation file set
: Accessible chromatin annotation of Fetal Mesangial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR095ALJ
released
Annotation file set
: Gene expression levels of Kidney mesangial cell from RNA-seq (ENCODE) fetal
Lab:
AMP-T2D consortium
Project:
AMP