Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
18
fibroblast
18
pericyte cell
16
endothelial cell
12
excitatory neuron
12
smooth muscle cell
11
macrophage
9
astrocyte
6
B cell
6
colon epithelial cell
6
erythroblast
5
CD8-positive, alpha-beta T cell
5
cortical cell of adrenal gland
5
inhibitory neuron
5
type II pneumocyte
4
CD4-positive, alpha-beta T cell
4
T cell
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
memory B cell
4
pancreatic acinar cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
heart
3
hepatocyte
3
mesothelial cell
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
oligodendrocyte precursor cell
3
pancreatic ductal cell
3
plasma cell
3
schwann cell
3
skeletal muscle fiber
3
tibial artery
3
tibial nerve
3
type I pneumocyte
2
cardiac fibroblast
2
muscle of leg
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
alveolar macrophage
2
basal cell
2
basal cell of epidermis
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
colon goblet cell
2
coronary artery
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
granular cell of epidermis
2
heart left ventricle
2
hepatic stellate cell
2
intestinal tuft cell
2
left renal cortex interstitium
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
midbrain
2
myoepithelial cell
2
naive regulatory T cell
2
naive t cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
paneth cell
2
parietal cell
2
peptic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
activated CD4-positive, alpha-beta T cell
1
adipocyte
1
adipose tissue
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
frontal cortex
1
gastric goblet cell
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
heart right ventricle
1
hepatoblast
1
immature natural killer cell
1
inflammatory macrophage
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
lung neuroendocrine cell
1
lymphocyte of B lineage (iPSC)
1
metanephros
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neuron
1
neutrophil
1
occipital lobe
1
pancreas
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasmacytoid dendritic cell
1
pons
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
Organ
2
connective tissue
Date released
4
February, 2021
2
November, 2021
1
February, 2020
0
May, 2020
Software used
2
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
software_used.software.name!
betacells_cytokines_t1d
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR722AXI
released
Annotation file set
: Accessible chromatin annotation of Fetal Mesangial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR044AFP
released
Annotation file set
: Accessible chromatin annotation of Fetal Mesangial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE