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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
pCHi-C
1
snATAC-seq
Available data
3
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
in vitro differentiated cells
3
primary cell
1
stem cell
Biosample term
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
50
CD8-positive, alpha-beta T cell
48
liver
48
thymus
45
right lung
44
islet of Langerhans
42
right kidney
40
B cell
40
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
endothelial cell
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
macrophage
31
CD14-positive monocyte
31
adipose tissue
30
fibroblast
28
regulatory T cell
26
MCF-7
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
pancreas
22
pancreatic ductal cell
22
pericyte cell
21
T cell
21
T-helper 17 cell
21
caudate nucleus
21
glomerular endothelial cell
21
natural killer cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
foreskin fibroblast
19
foreskin keratinocyte
19
heart right ventricle
19
keratinocyte
19
right atrium auricular region
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreatic beta cell
18
thyroid gland
18
tibial artery
18
transverse colon
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
substantia nigra
17
testis
16
HepG2
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
skeletal muscle tissue
16
smooth muscle cell
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
fibroblast of lung
15
frontal cortex
15
layer of hippocampus
15
neutrophil
15
pancreatic delta cell
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
14
skeletal muscle myoblast
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
temporal lobe
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
excitatory neuron
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
11
skeletal muscle satellite cell
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiac muscle cell
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
retinal pigment epithelial cell
8
skin fibroblast
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
kidney glomerular epithelial cell
7
mature neutrophil
7
memory B cell
7
renal cortical epithelial cell
7
right lobe of liver
7
uterus
6
BE(2)-C
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
HAP-1
Organ
4
connective tissue
Life stage
2
adult
1
unknown
Date released
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2019
Software used
1
chromhmm
1
encode-ccres
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
biosample_term_name!
A549
BJ cell
biosample_type!
in vitro differentiated cells
lab.title!
Stephen Parker, UMich
Showing 4 of 4 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP