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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
candidate regulatory elements
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
102
monocyte
54
A549
30
common myeloid progenitor, CD34-positive
27
hematopoietic multipotent progenitor cell
23
adipose tissue
23
retina
21
B cell
21
liver
20
pigmented layer of retina
19
adrenal gland
19
hepatocyte
18
K562
18
body of pancreas
18
tibial nerve
17
islet of Langerhans
16
caudate nucleus
16
epithelial cell of proximal tubule
16
stomach
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
mononuclear cell
15
omental fat pad
15
subcutaneous adipose tissue
14
endothelial cell of hepatic sinusoid
14
natural killer cell
13
CD8-positive, alpha-beta T cell
13
ascending aorta
13
coronary artery
13
glomerular endothelial cell
13
right atrium auricular region
13
spleen
13
tibial artery
12
cerebellum
12
endothelial cell
12
frontal cortex
12
gastrocnemius medialis
12
heart left ventricle
12
sigmoid colon
12
thyroid gland
12
transverse colon
11
pancreas
11
regulatory T cell
11
substantia nigra
10
T cell
10
T-helper 1 cell
10
ovary
10
psoas muscle
10
putamen
9
Ammon's horn
9
CD14-positive monocyte
9
CD4-positive, alpha-beta memory T cell
9
HeLa-S3
9
Peyer's patch
9
aorta
9
endocrine pancreas
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
upper lobe of left lung
8
angular gyrus
8
kidney tubule cell
8
right lobe of liver
8
temporal lobe
7
hepatic stellate cell
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
7
skeletal muscle tissue
7
testis
7
thoracic aorta
7
vagina
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
T-helper 2 cell
6
T47D
6
adipocyte
6
breast epithelium
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
fibroblast of breast
6
kidney glomerular epithelial cell
6
lower leg skin
6
macrophage
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
parathyroid adenoma
6
prostate gland
6
small intestine
6
stomach smooth muscle
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
fibroblast
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
glomerular visceral epithelial cell
5
heart
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
medulla oblongata
5
midbrain
5
middle frontal gyrus
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
5
nucleus accumbens
5
pancreatic alpha cell
5
pancreatic beta cell
5
pons
5
right cardiac atrium
5
skeletal muscle satellite cell
5
superior temporal gyrus
4
GM12878
4
T-helper 17 cell
4
bone tissue
4
cartilage tissue
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
glutamatergic neuron
4
heart right ventricle
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
lung
4
mast cell
4
mesenchymal stem cell
4
occipital lobe
4
pancreatic delta cell
4
skeletal muscle myoblast
4
uterus
3
8988T
3
A172
3
ACC112
Organ
4
connective tissue
Life stage
4
adult
3
embryonic
1
unknown
Date released
3
September, 2022
1
October, 2019
Software used
2
chromhmm
2
r
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
astrocyte
software_used.software.name!
encode-ccres
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP