Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
in vitro differentiated cells
4
primary cell
1
stem cell
Biosample term
83
heart
72
brain
66
muscle of arm
64
stomach
63
kidney
62
lung
60
placenta
57
muscle of leg
56
large intestine
55
small intestine
54
H1-hESC
54
muscle of back
53
HeLa-S3
52
left lung
48
thymus
45
right lung
41
right kidney
39
renal cortex interstitium
39
renal pelvis
37
adrenal gland
36
left kidney
35
spinal cord
27
CD8-positive, alpha-beta T cell
27
islet of Langerhans
23
CD4-positive, alpha-beta memory T cell
22
EndoC_BH1
22
K562
22
liver
20
breast cancer cell
19
CD14-positive monocyte
19
HFFc6
19
foreskin fibroblast
19
foreskin keratinocyte
19
keratinocyte
18
endothelial cell of umbilical vein
18
macrophage
18
trophoblast cell
17
endothelial cell
17
heart left ventricle
17
muscle of trunk
16
H9
16
HepG2
16
chorionic villus
16
retina
15
T-helper 17 cell
14
pancreatic ductal cell
13
bronchial epithelial cell
13
fibroblast
13
neurosphere
12
common myeloid progenitor, CD34-positive
12
heart right ventricle
12
hepatocyte
12
lymphoblastoid cell line
12
monocyte
12
neuroblastoma cell
12
osteoblast
12
regulatory T cell
11
B cell
11
GM12878
11
epithelial cell of prostate
11
fibroblast of lung
11
smooth muscle cell
11
spleen
10
22Rv1
10
Rhabdomyosarcoma
10
SK-N-SH
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
neutrophil
10
right renal cortex interstitium
10
trophoblast
9
HEK293
9
IMR-90
9
NAMALWA cell
9
SK-N-DZ
9
left renal pelvis
9
liposarcoma
9
mammary epithelial cell
9
pancreatic delta cell
9
pericyte cell
9
right renal pelvis
9
skeletal muscle myoblast
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
PC-9
8
SK-N-MC
8
T-helper 2 cell
cardiac muscle cell
8
choroid plexus epithelial cell
8
fibroblast cell line
8
fibroblast of dermis
8
limb
8
ovary
8
pancreatic acinar cell
8
pituitary stalk
8
testis
7
AG04449 cell
7
AG04450 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD8-positive, alpha-beta memory T cell
7
CMK
7
Jurkat
7
MCF-7
7
MG63
7
NT2-D1 cell
7
T cell
7
T-helper 1 cell
7
WERI-Rb-1
7
astrocyte
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
eye
7
fibroblast of pulmonary artery
7
pancreas
7
skeletal muscle tissue
7
skin fibroblast
6
CD4-positive, alpha-beta T cell
6
Daoy
6
GM08714
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HUES6
6
HUES8
6
Rh-4 cell
6
WI38
6
adipose tissue
6
diffuse intrinsic pontine glioma
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
glomerular endothelial cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mammary gland epithelial cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
psoas muscle
6
retinal pigment epithelial cell
5
A549
5
A673
5
CD4-positive helper T cell
5
Chondroid Chordoma
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KARPAS-422 cell
5
L1-S8
5
Panc1
5
acute myeloid leukemia
5
esophageal adenocarcinoma
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
non-pigmented ciliary epithelial cell
5
pancreatic stellate cell
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
sigmoid colon
5
skin of body
5
type I muscle cell
5
umbilical cord
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
COLO205
4
Caco-2 cell
4
DND-41
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
HUES48
4
KOPT-K1
4
L1-S8R
Organ
5
connective tissue
Life stage
adult
Date released
3
February, 2024
1
March, 2020
1
October, 2022
Software used
1
deeptools
1
eigenmt
1
macs
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
1
AMP-T2D consortium
Project
5
AMP
RFA
4
AMP2
1
AMP
biosample_term_name!
cardiac muscle cell
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
relevant_life_stage!
adult
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP