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Schema
Citing CMDGA
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Annotation type
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
primary cell
Biosample term
25
kidney
22
stomach
21
heart
20
breast cancer cell
17
brain
17
lung
17
muscle of arm
15
large intestine
15
muscle of back
15
placenta
14
adrenal gland
14
muscle of leg
14
small intestine
13
left lung
12
neuroblastoma cell
11
cardiomyocytes
11
gastric cancer cell
11
hematopoietic multipotent progenitor cell
11
renal cortex interstitium
11
right lung
10
diffuse intrinsic pontine glioma
10
renal pelvis
10
thymus
9
Rhabdomyosarcoma
9
induced pluripotent stem cell
9
islet of Langerhans
9
left kidney
9
liposarcoma
9
liver
9
right kidney
9
spleen
8
MCF-7
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
neuroblastoma cell line
8
spinal cord
7
B-lymphoblastoid cell line
7
cardiac muscle cell
7
fibroblast cell line
7
hESC cell
7
heart left ventricle
6
Chondroid Chordoma
6
H9
6
glioblastoma multiforme cancer stem cell
6
melanoma
6
neuronal stem cell
6
osteosarcoma
6
prostate cancer cell line
6
squamous cell lung carcinoma
5
A549
5
Ewing sarcoma
5
acute myeloid leukemia
5
adipocyte
5
adipose tissue
5
diffuse large B-cell lymphoma
5
embryonic stem cell
5
esophageal squamous cell carcinoma
5
layer of hippocampus
5
neural progenitor cell
5
pancreas
5
prostate gland
5
retina
5
subcutaneous adipose tissue
5
testis
5
triple-negative breast cancer
5
upper lobe of left lung
4
22Rv1
4
HEK293
4
HS-SY-2 cell
4
HepG2
4
Jurkat
4
LNCAP
4
Mantle cell lymphoma
4
Peyer's patch
4
RS4-11 cell
4
Rh-4 cell
4
Tumor-derived cell line
4
WI38
4
body of pancreas
4
bone tissue
4
chorionic villus
4
colon adenocarcinoma
4
dermal fibroblast
4
endodermal cell
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
keratinocyte
4
left renal pelvis
4
lower leg skin
4
lymphoblastoid cell line
4
melanoma cell
4
mesodermal cell
4
ovary
4
pancreatic cell line
4
rhabdomyosarcoma cell
4
right renal pelvis
4
sigmoid colon
4
skeletal muscle tissue
4
smooth muscle cell of the coronary artery
4
subcutaneous abdominal adipose tissue
4
synovial sarcoma cell
3
CMK
3
COLO-320 cell
3
COLO205
3
GM06990
3
GM12864
3
GM12865
3
GM12873
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
IMR-90
3
K562
3
LHCN-M2
3
MCF 10A
3
MG63
3
MM.1S
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RKO
3
RPMI8226
3
RWPE1
3
SK-N-DZ
3
SK-N-MC
3
SW480
3
WERI-Rb-1
3
ascending aorta
3
breast epithelium
3
cardiac precursors (cardiac muscle cell)
3
caudate nucleus
3
colonic mucosa
3
endocrine pancreas
3
epithelial ovarian cancer cell
3
esophagus muscularis mucosa
3
fibroblast
3
fibroblast of cardiac tissue
3
heart right ventricle
3
hematopoietic cell
3
left renal cortex interstitium
3
lung fibroblast cell line
3
lymphoblast
3
mesenchymal stem cell
3
mesendoderm
3
metastatic melanoma
3
muscle of trunk
3
pancreatic ductal adenocarcinoma
3
prostate derived cell line
3
right renal cortex interstitium
2
143B
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AGS cell
2
ALL-SIL cell
2
AsPC-1 cell
2
B cell
2
B-lymphocyte
2
BCBL-1 cell
2
BE(2)-C
2
BEAS-2B cell
2
BG03
2
BICR 31
2
BJ cell
2
BT-474 cell
2
BT-549 cell
2
Burkitt's lymphoma
2
BxPC-3 cell
2
C666-1 cell
2
CA46 cell
2
CAL-51 cell
2
CCRF-CEM cell
2
CD8-Positive T-Lymphocytes
2
CFPAC-1 cell
2
CHL-1 cell
2
CHP-134 cell
2
COLO 741 cell
2
CTV-1 cell
2
CaSki cell
2
Caco-2 cell
2
Caki-1 cell
Organ
3
connective tissue
Life stage
1
embryonic
Date released
6
September, 2022
3
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
foreskin fibroblast
biosample_type!
primary cell
Showing 3 of 3 results
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Download
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP