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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
in vitro differentiated cells
2
primary cell
Biosample term
105
monocyte
32
CD8-positive, alpha-beta T cell
25
retina
20
breast cancer cell
20
pigmented layer of retina
19
endothelial cell
17
fibroblast
14
macrophage
13
hepatocyte
13
kidney
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
neuroblastoma cell
12
pancreatic ductal cell
11
gastric cancer cell
10
EndoC_BH1
10
Rhabdomyosarcoma
9
astrocyte
9
keratinocyte
9
liposarcoma
9
pericyte cell
8
HepG2
8
diffuse intrinsic pontine glioma
8
fibroblast cell line
8
osteoblast
8
pancreatic acinar cell
8
pancreatic beta cell
8
smooth muscle cell
7
B-lymphoblastoid cell line
7
acute myeloid leukemia
7
fibroblast of cardiac tissue
7
heart
7
islet of Langerhans
7
liver
7
mammary epithelial cell
7
melanoma
7
pancreas
7
pancreatic alpha cell
6
Rh-4 cell
6
T cell
6
brain
6
glioblastoma multiforme cancer stem cell
6
glutamatergic neuron
6
hESC cell
6
hepatic stellate cell
6
lymphoblastoid cell line
5
Chondroid Chordoma
5
Ewing sarcoma
5
Jurkat
5
MCF-7
5
RS4-11 cell
5
bronchial epithelial cell
5
cardiac muscle cell
5
dermal fibroblast
5
erythroblast
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
inhibitory neuron
5
melanoma cell
5
osteosarcoma
5
pancreatic delta cell
5
prostate cancer cell line
4
B-lymphocyte
4
COLO205
4
HS-SY-2 cell
4
Mantle cell lymphoma
4
Tumor-derived cell line
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
choroid plexus epithelial cell
4
glial cell
4
glioblastoma cell
4
glioma cell
4
heart left ventricle
4
immortal neural cell line cell
4
leukemic stem cell
4
lung fibroblast cell line
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
4
pancreatic stellate cell
4
preadipocyte
4
regulatory T cell
4
skeletal muscle satellite cell
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
cardiac fibroblast
3
786-O cell
3
A-673 cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
G-401 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
GM23248
3
H1-hESC
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
HT-29
3
HeLa cell
3
HuH-7
3
IMR-90
3
Ishikawa
3
K562
3
KARPAS-422 cell
3
Kasumi-1
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
MDA-MB-231 cell
3
MG63
3
MM.1S
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NCCIT cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
OCI-LY7
3
PA-TU-8988T cell
3
PANC-1 cell
3
PC-3
3
PC-9
3
REH cell
3
RKO
3
RPMI8226
3
RWPE1
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
SW480
3
Saos-2 cell
3
T-47D cell
3
Th1 cell
3
Th17 cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
U937
3
WERI-Rb-1
3
WI-38 cell
3
ZR-75-1 cell
3
adipose tissue
3
aortic adventitial fibroblast
3
bone marrow cell
3
cardiac myocyte cell derived cell line
3
caudate nucleus
3
chronic lymphocytic leukemia cell
3
colon cancer cell line
3
colon epithelial cell
3
coronary artery
3
cortex of kidney
3
cortical cell of adrenal gland
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
enterocyte
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
globus pallidus
3
glomerular visceral epithelial cell
3
hESC H9
3
hematopoietic cell
3
lymphoblast
3
mast cell
3
midbrain
3
mononuclear cell of bone marrow
3
multiple myeloma cell line
Organ
2
connective tissue
Life stage
1
unknown
Date released
1
February, 2024
1
May, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
1
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
biosample_term_name!
heart right ventricle
renal cortex interstitium
biosample_type!
in vitro differentiated cells
Showing 2 of 2 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP