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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
10
in vitro differentiated cells
7
primary cell
1
stem cell
Biosample term
53
common myeloid progenitor, CD34-positive
41
endothelial cell
40
B cell
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
30
macrophage
26
regulatory T cell
24
pericyte cell
23
epithelial cell of proximal tubule
23
natural killer cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
smooth muscle cell
21
T-helper 1 cell
21
glomerular endothelial cell
20
mononuclear cell
19
T-helper 17 cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
17
pancreatic beta cell
17
pancreatic ductal cell
17
trophoblast cell
16
CD14-positive monocyte
16
CD8-positive, alpha-beta T cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
keratinocyte
16
osteoblast
16
pancreatic alpha cell
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
T-helper 2 cell
15
fibroblast of lung
15
foreskin fibroblast
15
pancreatic delta cell
14
pancreatic acinar cell
13
mammary gland epithelial cell
13
monocyte
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
mammary epithelial cell
11
fibroblast of dermis
11
glomerular visceral epithelial cell
10
dermis blood vessel endothelial cell
10
erythroblast
10
hepatic stellate cell
10
kidney tubule cell
10
neutrophil
10
retinal pigment epithelial cell
9
mature neutrophil
9
naive T cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
epithelial cell of prostate
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
mast cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
choroid plexus epithelial cell
7
endothelial cell of lymphatic vessel
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pulmonary artery endothelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
adipocyte
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
myofibroblast cell
6
naive B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
plasma cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain microvascular endothelial cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
tracheal epithelial cell
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
megakaryocyte
4
mesothelial cell
4
nephron progenitor
4
neuronal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
Organ
7
connective tissue
Life stage
2
adult
1
unknown
Date released
3
February, 2024
1
February, 2021
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
1
encode-ccres
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
biosample_term_name!
liver
month_released!
May, 2021
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP