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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
1
gene expression
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ChIP-seq
1
snRNA-seq
Available data
bed bed3+
17
bigWig
6
bed bed9
1
bigBed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
3
tissue
2
in vitro differentiated cells
2
primary cell
Biosample term
28
islet of Langerhans
23
heart
23
kidney
21
monocyte
21
stomach
20
brain
18
A549
18
lung
16
adrenal gland
16
epithelial cell of proximal tubule
16
induced pluripotent stem cell
16
liver
16
muscle of arm
16
small intestine
15
glomerular endothelial cell
15
hepatocyte
15
muscle of leg
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
adipose tissue
12
neural progenitor cell
12
regulatory T cell
12
subcutaneous adipose tissue
11
EndoC_BH1
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right kidney
11
right lung
11
thymus
10
B cell
10
endothelial cell
10
pancreatic ductal cell
9
CD4-positive, alpha-beta memory T cell
9
H1-hESC
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
left kidney
9
macrophage
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
body of pancreas
8
coronary artery
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
8
tibial artery
8
tibial nerve
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
ascending aorta
7
embryonic stem cell
7
frontal cortex
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
omental fat pad
7
pancreatic acinar cell
7
right atrium auricular region
6
K562
6
T cell
6
cerebellum
6
heart right ventricle
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
neutrophil
6
ovary
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
amygdala
5
anterior cingulate cortex
5
aorta
5
endothelial cell of umbilical vein
5
glomerular visceral epithelial cell
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
nucleus accumbens
5
pancreatic stellate cell
5
right lobe of liver
5
sigmoid colon
5
skeletal muscle tissue
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
angular gyrus
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum (Hemisphere)
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mesangial cell
4
mesenchymal stem cell
4
muscle of trunk
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
right cardiac atrium
4
skin of body
4
temporal lobe
4
vagina
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
3
S-shaped body
3
T follicular helper cell
3
adult endothelial progenitor cell
Organ
4
connective tissue
3
eye
Life stage
4
embryonic
2
adult
Date released
5
September, 2022
February, 2020
1
February, 2024
1
October, 2019
Software used
6
chromhmm
1
deeptools
1
r
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
immortal human breast epithelial cell line cell
files.file_type!
bed bed3+
month_released!
February, 2020
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR764IKI
released
Annotation file set
: Chromatin states for BSS01504 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR034BAL
released
Annotation file set
: Chromatin states for BSS01503 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883QBG
released
Annotation file set
: Chromatin states for BSS01502 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP