Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
in vitro differentiated cells
primary cell
1
stem cell
Biosample term
90
heart
86
stomach
81
kidney
73
brain
68
lung
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
56
large intestine
54
H1-hESC
52
left lung
49
liver
48
thymus
45
right lung
44
islet of Langerhans
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
31
adipose tissue
26
MCF-7
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
sigmoid colon
22
caudate nucleus
22
pancreas
21
subcutaneous adipose tissue
20
breast cancer cell
20
coronary artery
20
ovary
20
pigmented layer of retina
19
HFFc6
19
heart right ventricle
19
right atrium auricular region
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
omental fat pad
17
testis
16
GM12878
16
H9
16
chorionic villus
16
layer of hippocampus
16
upper lobe of left lung
15
ascending aorta
15
cerebellum
15
frontal cortex
14
Peyer's patch
14
endocrine pancreas
14
prostate gland
14
putamen
13
aorta
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
11
breast epithelium
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
IMR-90
9
NAMALWA cell
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
OCI-LY7
8
PC-9
8
SK-N-MC
8
cingulate gyrus
8
duodenal mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
NT2-D1 cell
7
PC-3
7
RWPE1
7
SW480
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
eye
7
right lobe of liver
7
uterus
6
Brodmann (1909) area 46
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LNCAP
6
OCI-LY1
6
RPMI8226
6
Rh-4 cell
6
SJSA1
6
WI38
6
anterior cingulate cortex
6
diffuse intrinsic pontine glioma
6
hypothalamus
6
iPSC derived cell line
6
induced pluripotent stem cell
6
midbrain
6
middle frontal gyrus
6
mucosa of rectum
6
nucleus accumbens
6
occipital lobe
6
superior temporal gyrus
6
urinary bladder
5
A172
5
ACHN
5
C1 segment of cervical spinal cord
5
Caki2
5
Chondroid Chordoma
5
CyT49
5
Ewing sarcoma
5
GM04503
5
GM04504
5
H4
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
L1-S8
5
M059J
5
NB4
5
OCI-LY3
5
Panc1
5
RCC 7860
5
esophageal adenocarcinoma
5
muscle layer of colon
5
muscle layer of duodenum
5
prostate cancer cell line
5
right cardiac atrium
5
skin of body
5
umbilical cord
4
ACC112
Organ
1
connective tissue
Date released
1
March, 2020
Software used
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
biosample_type!
in vitro differentiated cells
primary cell
biosample_type!!
primary cell
organ_slims!
musculature of body
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP