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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
eQTL
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
in vitro differentiated cells
5
primary cell
1
stem cell
Biosample term
131
monocyte
69
heart
67
stomach
65
kidney
60
HeLa-S3
55
brain
52
lung
51
H1-hESC
51
muscle of arm
49
CD8-positive, alpha-beta T cell
48
adrenal gland
48
small intestine
46
placenta
43
A549
43
large intestine
43
muscle of leg
42
endothelial cell
42
islet of Langerhans
41
common myeloid progenitor, CD34-positive
41
muscle of back
40
liver
39
left lung
37
retina
37
thymus
35
B cell
35
macrophage
34
right lung
33
K562
33
hepatocyte
32
fibroblast
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spleen
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
heart left ventricle
25
adipose tissue
25
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
pericyte cell
22
pancreatic ductal cell
21
epithelial cell of proximal tubule
21
natural killer cell
21
smooth muscle cell
21
tibial nerve
20
MCF-7
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
T-helper 1 cell
18
HFFc6
18
T-helper 17 cell
18
pancreas
18
pancreatic beta cell
17
T cell
17
caudate nucleus
17
coronary artery
17
keratinocyte
17
ovary
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
16
astrocyte
16
endothelial cell of hepatic sinusoid
15
CD8-positive, alpha-beta memory T cell
15
foreskin fibroblast
15
foreskin keratinocyte
15
omental fat pad
15
pancreatic delta cell
15
psoas muscle
15
substantia nigra
15
transverse colon
14
HepG2
14
gastrocnemius medialis
14
mononuclear cell
14
osteoblast
14
testis
14
thyroid gland
14
tibial artery
14
trophoblast cell
13
GM12878
13
H9
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
fibroblast of cardiac tissue
13
frontal cortex
13
heart right ventricle
13
neutrophil
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
cerebellum
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
excitatory neuron
11
mammary epithelial cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
pancreatic stellate cell
10
right renal pelvis
10
skeletal muscle myoblast
9
epithelial cell of prostate
9
fibroblast of lung
9
hepatic stellate cell
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skeletal muscle satellite cell
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
esophagus
8
fibroblast cell line
8
mammary gland epithelial cell
8
mast cell
8
pituitary stalk
8
trophoblast
7
amygdala
7
choroid plexus epithelial cell
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
memory B cell
7
skin fibroblast
7
temporal lobe
7
thoracic aorta
6
CD1c-positive myeloid dendritic cell
6
CMK
6
GM12865
6
HAP-1
6
HT-29
6
HUES8
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
anterior cingulate cortex
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
erythroblast
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
induced pluripotent stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
smooth muscle cell of the coronary artery
6
tongue
6
uterus
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD4-positive helper T cell
5
Caco-2 cell
5
Chondroid Chordoma
5
Classical Dendritic Cell
Organ
6
connective tissue
Life stage
1
adult
1
unknown
Date released
2
February, 2024
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2022
Software used
2
macs
chromhmm
deeptools
1
eigenmt
1
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
3
Stephen Parker, UMich
Project
6
AMP
RFA
3
AMP
3
AMP2
biosample_type!
in vitro differentiated cells
software_used.software.name!
chromhmm
deeptools
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP