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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
primary cell
4
in vitro differentiated cells
1
stem cell
Biosample term
54
HeLa-S3
50
H1-hESC
40
islet of Langerhans
39
kidney
38
neural progenitor cell
33
heart
31
retina
27
stomach
26
liver
25
brain
22
K562
21
subcutaneous adipose tissue
20
breast cancer cell
20
lung
20
pigmented layer of retina
19
HFFc6
19
heart left ventricle
19
muscle of arm
18
adrenal gland
18
muscle of leg
17
placenta
17
small intestine
16
large intestine
15
induced pluripotent stem cell
15
muscle of back
15
tibial nerve
14
spleen
13
adipocyte
13
adipose tissue
13
caudate nucleus
13
coronary artery
13
left lung
13
pancreas
13
renal cortex interstitium
13
renal pelvis
13
spinal cord
13
thymus
12
GM12878
12
H9
12
hematopoietic multipotent progenitor cell
12
lymphoblastoid cell line
12
neuroblastoma cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
omental fat pad
11
putamen
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
ascending aorta
10
body of pancreas
10
cardiomyocytes
10
frontal cortex
10
gastric cancer cell
10
progenitor cell of endocrine pancreas
10
right kidney
9
Ammon's horn
9
HepG2
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
testis
8
B-lymphoblastoid cell line
8
EndoC_BH1
8
cerebellum
8
fibroblast cell line
8
left cardiac atrium
8
ovary
7
A549
7
T-cell acute lymphoblastic leukemia
7
amygdala
7
aorta
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
chondrocyte
7
embryonic stem cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
temporal lobe
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
Rh-4 cell
6
SGBS preadipocytes
6
acute myeloid leukemia
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
neuroblastoma cell line
6
nucleus accumbens
6
pancreatic ductal cell
6
upper lobe of left lung
5
C1 segment of cervical spinal cord
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HL-60
5
IMR-90
5
Jurkat
5
LNCAP
5
Peyer's patch
5
RS4-11 cell
5
SK-N-MC
5
WERI-Rb-1
5
cartilage tissue
5
cerebellum (Hemisphere)
5
neuronal stem cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
sigmoid colon
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B cell
4
BE(2)-C
4
BJ cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HT-29
4
KARPAS-422 cell
4
LHCN-M2
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NHEK
4
NT2-D1 cell
4
Normal Human Astrocytes
4
OCI-LY7
4
PANC-1 cell
4
PC-3
4
PC-9
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RKO
4
RPMI8226
4
RWPE1
4
SAEC
4
SK-N-DZ
4
SK-N-SH_RA
4
SW480
4
T-47D cell
4
U-266 cell
4
U2OS
4
WI-38 cell
4
WI38
4
adipose-derived stem cell
4
bone tissue
4
breast epithelium
4
dermal fibroblast
4
diffuse large B-cell lymphoma
4
esophageal squamous cell carcinoma
4
esophagus squamous epithelium
4
fibroblast of cardiac tissue
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
mesendoderm
4
right renal pelvis
4
skeletal muscle tissue
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
thyroid gland
4
transverse colon
4
triple-negative breast cancer
3
786-O cell
3
A-673 cell
3
COLO-320 cell
3
D341 Med cell
3
DND-41 cell
3
Daoy
3
ECC-1
3
G-401 cell
3
GM08714
3
GM10248
Organ
5
connective tissue
Life stage
1
embryonic
Date released
September, 2022
3
February, 2021
1
June, 2020
1
March, 2020
May, 2021
Software used
3
macs
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_type!
primary cell
month_released!
August, 2020
May, 2021
September, 2022
Showing 5 of 5 results
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Download
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP