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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
55
HeLa-S3
51
CD8-positive, alpha-beta T cell
51
H1-hESC
44
endothelial cell
44
islet of Langerhans
39
kidney
39
neural progenitor cell
35
fibroblast
35
macrophage
33
heart
32
hepatocyte
31
retina
29
stomach
27
liver
25
brain
25
pancreatic ductal cell
24
smooth muscle cell
23
B cell
23
EndoC_BH1
23
K562
23
adipocyte
21
pericyte cell
21
subcutaneous adipose tissue
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
heart left ventricle
19
muscle of arm
19
muscle of leg
18
HFFc6
18
embryonic stem cell
18
glomerular endothelial cell
18
placenta
18
regulatory T cell
18
small intestine
17
large intestine
17
pancreatic acinar cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
natural killer cell
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic alpha cell
15
tibial nerve
14
T-helper 1 cell
14
astrocyte
14
cardiac muscle cell
14
coronary artery
14
pancreas
14
spinal cord
14
thymus
13
GM12878
13
H9
13
caudate nucleus
13
endothelial cell of umbilical vein
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
left lung
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
12
adipose tissue
12
foreskin fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic delta cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T cell
11
T-helper 17 cell
11
body of pancreas
11
erythroblast
11
mesenchymal stem cell
11
omental fat pad
11
putamen
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
frontal cortex
10
gastric cancer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
Ammon's horn
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
ovary
9
testis
8
A549
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
hepatic stellate cell
8
left cardiac atrium
8
mast cell
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
7
CD4-positive helper T cell
7
Jurkat
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
memory B cell
7
temporal lobe
6
Chondroid Chordoma
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
sigmoid colon
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
GM12864
5
GM12865
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HCT-116 cell
5
HEK293
5
KARPAS-422 cell
5
Non-Classical Monocyte
5
PC-9
5
SGBS preadipocytes
5
T-helper 2 cell
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
GM12864
month_released!
September, 2022
organ_slims!
tongue
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP