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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
69
heart
64
stomach
62
HeLa-S3
57
A549
56
brain
56
kidney
52
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
45
placenta
44
muscle of leg
44
neural progenitor cell
41
large intestine
40
liver
39
left lung
39
muscle of back
38
K562
37
thymus
35
retina
34
right lung
32
hematopoietic multipotent progenitor cell
32
right kidney
30
renal pelvis
29
islet of Langerhans
29
renal cortex interstitium
27
adipose tissue
27
heart left ventricle
27
left kidney
26
spinal cord
24
spleen
22
tibial nerve
20
body of pancreas
20
coronary artery
20
pigmented layer of retina
19
EndoC_BH1
19
HFFc6
19
caudate nucleus
18
MCF-7
18
adipocyte
18
right atrium auricular region
18
sigmoid colon
18
tibial artery
17
ovary
17
pancreas
17
psoas muscle
16
frontal cortex
16
heart right ventricle
15
omental fat pad
15
subcutaneous adipose tissue
15
thyroid gland
15
transverse colon
14
cerebellum
14
gastrocnemius medialis
14
substantia nigra
13
GM12878
13
HepG2
13
ascending aorta
13
muscle of trunk
13
putamen
12
chorionic villus
12
embryonic stem cell
12
endocrine pancreas
12
testis
11
Ammon's horn
11
aorta
11
layer of hippocampus
11
left cardiac atrium
11
skeletal muscle tissue
10
H9
10
Peyer's patch
10
chorion membrane
10
pituitary stalk
10
temporal lobe
10
upper lobe of left lung
9
endometrium adenocarcinoma
9
extended pluripotent stem (EPS) cells
9
immortal human breast epithelial cell line cell
9
lymphocyte
9
mesenchymal stem cell
9
progenitor cell of endocrine pancreas
9
thoracic aorta
8
SK-N-SH
8
angular gyrus
8
breast epithelium
8
esophagus
8
esophagus muscularis mucosa
8
left renal cortex interstitium
8
left renal pelvis
8
prostate gland
8
right lobe of liver
8
right renal cortex interstitium
8
right renal pelvis
8
trophoblast
8
vagina
7
NAMALWA cell
7
SK-N-DZ
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus squamous epithelium
7
eye
7
limb
7
lymphoblastoid cell line
7
mucosa of rectum
7
occipital lobe
7
right cardiac atrium
7
stomach smooth muscle
7
tongue
7
urinary bladder
7
uterus
6
22Rv1
6
Brodmann (1909) area 46
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
amygdala
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
endodermal cell
6
globus pallidus
6
hypothalamus
6
iPSC derived cell line
6
lower leg skin
6
medulla oblongata
6
mesendoderm
6
midbrain
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
nucleus accumbens
6
parathyroid adenoma
6
pons
6
retinal pigment epithelial cell
6
skin of body
6
superior temporal gyrus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
Caco-2 cell
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HAP-1
5
HCT116
5
HEK293
5
HL-60
5
HT-29
5
HUES8
5
LoVo cell
5
MM.1S
5
NT2-D1 cell
5
OCI-LY7
5
PC-9
SK-N-MC
5
WERI-Rb-1
5
bipolar neuron
5
chondrocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
middle frontal gyrus
5
pancreatic ductal cell
4
A172
4
A673
4
ACHN
4
AG08396 cell
4
CMK
4
Caki2
4
CyT49
4
Daoy
4
GM03348
4
GM04503
4
GM04504
4
GM08714
4
GM10248
4
GM10266
4
GM12875
4
GM12891
4
GM12892
4
GM23248
4
H4
4
HUES6
4
HuH-7
4
KBM-7
4
L1-S8
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
SK-N-MC
biosample_type!
primary cell
month_released!
February, 2021
March, 2023
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP